Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,668,130 – 4,668,249 |
Length | 119 |
Max. P | 0.595029 |
Location | 4,668,130 – 4,668,249 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.90 |
Mean single sequence MFE | -39.27 |
Consensus MFE | -28.60 |
Energy contribution | -29.35 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.73 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.595029 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4668130 119 - 22224390 UUAUUCGUUGUGCUUUCUCGUUUGGUUCGAUGCCAUUGGGUGGUGGUGGGGCUGCGAAAAUGGGG-CAAACCAAACCCAAAACGUUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA ...((((((.((((....((((((((.....))))((((((..((((...(((.(......).))-)..)))).))))))))))..)))).))))))....(((((......)))))... ( -38.00) >DroSec_CAF1 29411 119 - 1 UUAUUCGUCGUGCUUUCUCGGUUGGUUCGAUGCCAUUGGGUGGUGGUGGGGCUCCGAAAAUGGGG-CAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA ...(((((..((((....((..((((.....))))((((((..((((...(((((......))))-)..)))).))))))..))..))))..)))))....(((((......)))))... ( -39.60) >DroEre_CAF1 30186 119 - 1 UUAUUUGCCGUGCAUUCUUGGGUGGUUCGAUGCCAU-GGGUGGUGGAGGGGCUCCAAAAACGGGGCCAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA ...(((((((.((........(((((.....)))))-((((..(((...((((((......))))))...))).)))).....))))))))).........(((((......)))))... ( -42.70) >DroYak_CAF1 26708 118 - 1 UUGUUUGCAGUGCAUUCUUGGGUGGUUCGAUGCCAU-GGGCGGUGGUGGGGCUCCAAAAACGGGG-CAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA ............((((....))))....((((((((-(((...((((...(((((......))))-)..))))..))))....(..((((.(((....))).))))..)..))))))).. ( -36.80) >consensus UUAUUCGCCGUGCAUUCUCGGGUGGUUCGAUGCCAU_GGGUGGUGGUGGGGCUCCAAAAACGGGG_CAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA ............................(((((((..((((..((((...(((((......)))).)..)))).)))).....(..((((.(((....))).))))..)..))))))).. (-28.60 = -29.35 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:53 2006