Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,667,765 – 4,667,871 |
Length | 106 |
Max. P | 0.806217 |
Location | 4,667,765 – 4,667,871 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.97 |
Mean single sequence MFE | -37.38 |
Consensus MFE | -23.16 |
Energy contribution | -23.73 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.02 |
Structure conservation index | 0.62 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4667765 106 - 22224390 CACAAAGCACCACAAAGACAUGCACCAGCAGCCGAAAUGGGCGGUG--------------GGCGUGGUGGUGUUUGCAUAAAUAAAAUGGCAUAAUAAUACCGCGAGUGUGUGGACCUUU ...((((..(((((....(((((.(((.(.(((......)))).))--------------))))))(((((((((((............)))....)))))))).....)))))..)))) ( -35.00) >DroSec_CAF1 29066 96 - 1 CAC----------AAAGACAUGCACCAGCAGCCGAAAUGGGCGGUG--------------GGCGUGGCGGUGUUUGCAUGAAUAAAAUGGCAUAAUAAUACCGCGAGUGUGUGGACCUUA (((----------(....(((((.(((.(.(((......)))).))--------------))))))(((((((((((((.......)).)))....)))))))).....))))....... ( -33.20) >DroEre_CAF1 29811 119 - 1 CGCAAAGCACCACAAAGACAUGCACCAGCAUUCGAAAUGGGCGGUGGGCGGUGGGC-GUGGUCGUGGUGCUGUUUGCAUGAAUAAAAGAGCAUAAUAAUACCGCGAGUGUGUGGACCGCA (((...((.(((....((.((((....))))))....))))).))).(((((..((-..(.((((((((.(((((((............))).)))).)))))))).)..))..))))). ( -42.40) >DroYak_CAF1 26327 120 - 1 CACAAAACACCACAAAGACAUGCACUAGCAGCCGAAAUGGGCGAUGGGCGGUGGUCGGUGGGCGUGGUGCUGUUUGCAUGUAUAAAGGGGCAUAAUAAUACCGCGAGUGUGUGGACCGCU ((((..((.((((...(((.(((.(((...(((......)))..))))))...))).)))).(((((((.(((((((.(......)...))).)))).))))))).)).))))....... ( -38.90) >consensus CACAAAGCACCACAAAGACAUGCACCAGCAGCCGAAAUGGGCGGUG______________GGCGUGGUGCUGUUUGCAUGAAUAAAAGGGCAUAAUAAUACCGCGAGUGUGUGGACCGCA ..................(((((((..((.(((......))).)).................(((((((.(((((((............))).)))).))))))).)))))))....... (-23.16 = -23.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:52 2006