Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,665,582 – 4,665,696 |
Length | 114 |
Max. P | 0.678290 |
Location | 4,665,582 – 4,665,696 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.22 |
Mean single sequence MFE | -29.88 |
Consensus MFE | -20.34 |
Energy contribution | -21.90 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.13 |
Mean z-score | -2.23 |
Structure conservation index | 0.68 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678290 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4665582 114 + 22224390 U------AUUCGUCCGUGCUCCGGUGUUCGUUAAAAAUGGGCGCUGUUUGCAUUGAAUAAAAUUUUAAUAGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA (------((((((((((((((((((((((((.....)))))))))......((((((......)))))).))))))))(((.....)))......))))))))................. ( -34.30) >DroSec_CAF1 26918 112 + 1 U------AUUCGUCCGUGCUCC-GUGUUCGUUAAAAAUGGUCGCUGUUUGCAUUGAAUAA-AUUUUAAUGGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA (------(((((((((((((((-(((..(((.....)))..)))......(((((((...-..)))))))))))))))(((.....)))......))))))))................. ( -31.90) >DroEre_CAF1 27645 112 + 1 U------AGUCGUCCGUGCUCG-UUGCUCGCUAAAAAUGGGCGAUGUUUGCAUUGAAUAA-AUUUUAAUAGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA .------..(((((((((((((-(.(((((((.......))))).))..))((((((...-..))))))..)))))))(((.....)))......))))).................... ( -26.60) >DroYak_CAF1 24092 118 + 1 UCGUACUAUUCACGCGUGCUCU-GUGUUUGUUAAAAAUCGGCGAUGUUUGCAUUGAAUAA-AUUCAAAUAGCAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA ......(((((((((((((.((-(((((((...........(((((....))))).....-...)))))).)))....(((.....)))))))))).))))))................. ( -26.71) >consensus U______AUUCGUCCGUGCUCC_GUGUUCGUUAAAAAUGGGCGAUGUUUGCAUUGAAUAA_AUUUUAAUAGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA .......(((((((((((((((.((((((((.....))))))))(((((.....)))))...........))))))))(((.....)))......))))))).................. (-20.34 = -21.90 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:45 2006