Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,664,074 – 4,664,174 |
Length | 100 |
Max. P | 0.758924 |
Location | 4,664,074 – 4,664,174 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.26 |
Mean single sequence MFE | -24.30 |
Consensus MFE | -16.35 |
Energy contribution | -16.47 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.87 |
Structure conservation index | 0.67 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.758924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4664074 100 + 22224390 CAAAUUUAAUUCAUCUCUGUGCUUUUA--------------------CUGAGGCAAAGUUUUAUUUAAAACGCAACGAUUCCCUCGGGAUUUGGCCAAUCAAAGGGAAUCAAUUUGCGCU ....(((((.......((.((((((..--------------------..)))))).))......))))).(((((.((((((((...((((.....))))..))))))))...))))).. ( -25.92) >DroSec_CAF1 25397 94 + 1 CAAAUUUAAUUCAUCU------UUUUA--------------------CAGAGGCAAAGUUUCAUUUAAAACGCAGCGAUUCCCUCGGGAUUUGGCCAAUCAAAGGGAAUCAAUUUGCGCG ................------.....--------------------..(((((...)))))........(((((.((((((((...((((.....))))..))))))))...))))).. ( -20.70) >DroEre_CAF1 26201 98 + 1 CAAAUUUAAUUCAUCUCUG--CUUUUA--------------------CUGAGGGAAAGUUUUAUUUAAAAUGCAGCGAUUCCCUGGGGUUUUGGCCAAUCAAAGGGAAUCAAUUUACGCU ................(((--((((((--------------------.(((((.....)))))..))))).)))).((((((((..((((......))))..)))))))).......... ( -20.80) >DroYak_CAF1 22555 118 + 1 CAAAUUUAAUUCAUCACUG--CUUUUACCACUAUUACUUUUUUUUCACUGAGAGAAAGUUAUAUUUAAAACGCAGCGAUUCCCUGGGGAUUUGGCCAAUCAAAGGGAAUCAAUUUGCGCU ((((((..........(((--((((((....(((.((((((((((....)))))))))).)))..))))).)))).((((((((...((((.....))))..)))))))))))))).... ( -29.80) >consensus CAAAUUUAAUUCAUCUCUG__CUUUUA____________________CUGAGGCAAAGUUUUAUUUAAAACGCAGCGAUUCCCUCGGGAUUUGGCCAAUCAAAGGGAAUCAAUUUGCGCU ......................................................................(((((.((((((((...((((.....))))..))))))))...))))).. (-16.35 = -16.47 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:40 2006