Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,663,856 – 4,663,957 |
Length | 101 |
Max. P | 0.526306 |
Location | 4,663,856 – 4,663,957 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -23.78 |
Consensus MFE | -16.90 |
Energy contribution | -19.40 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.09 |
Mean z-score | -1.52 |
Structure conservation index | 0.71 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4663856 101 + 22224390 AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGUAAAAAUAAUGCAGAUUUCAUUUUGCAUUAUUUUGCUAUUAAAUUCGACGAGUGUUGGCGCUAAGAU------------------- .((..(....((.....))(((((.((((...(((((((.(((((((((......)))))))))))))))).......)))).))))))..))........------------------- ( -26.70) >DroSec_CAF1 25178 101 + 1 AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGCAAAAAUAAUGCAGGUUUCAUUUUGCAUUAUUUUGCCAUUAAAUUCGACGAGUGUUGGCGCCAAGAU------------------- ...((((....((.....((((((.((((.((.((((((.(((((((((......)))))))))))))))))......)))).))))))..))))))....------------------- ( -27.80) >DroEre_CAF1 25966 120 + 1 AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGUAAAAAUAAUGCAGGUUUCAUUUUUCAUUAUUUUGCUAUUAAAUUCGACGAGUGCUGGUGCCAAACUAAAAUGCUCUUUAUGAGUU ((((.(((((.(((.....(((((.((((...(((((((.(((((.(((......))).)))))))))))).......)))).))))).((((.....))))...)))..))))).)))) ( -24.40) >DroYak_CAF1 22337 106 + 1 AGCUGGUAAAUGUAAUCCACACUCUUUGAUUGAGCAAAAAUAAUGCAGGUUUCAU----------UUUGCCAUUAAAUUCGACGAGUUUUGGCGCCAAACUAAAAUGCUCUUUU----UU ...(((((((((....((....((.......))(((.......))).))...)))----------)).((((..((((((...)))))))))))))).................----.. ( -16.20) >consensus AGCUGGUAAAUGUAAUUCACACUCUUUGAUUGAGCAAAAAUAAUGCAGGUUUCAUUUUGCAUUAUUUUGCCAUUAAAUUCGACGAGUGUUGGCGCCAAAAU___________________ ...((((.........((((((((.((((((((...(((((((((((((......)))))))))))))....))))..)))).))))).))).))))....................... (-16.90 = -19.40 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:39 2006