Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,661,753 – 4,661,863 |
Length | 110 |
Max. P | 0.837822 |
Location | 4,661,753 – 4,661,863 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.87 |
Mean single sequence MFE | -28.26 |
Consensus MFE | -22.43 |
Energy contribution | -22.50 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.16 |
Mean z-score | -1.90 |
Structure conservation index | 0.79 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4661753 110 + 22224390 GAAAACGCGAACUAAAGUGCGGCAGAGUAAUGCUCUUAGACCGAAAGGUUUUCAAAAGCGUUCGAAAAAAAAACAUGCCGAACGGAAAGCGUA----------CGCCAAAUUGAGCUAAA ....((((........((.(((((..((((((((...(((((....))))).....))))))..........)).))))).)).....)))).----------.(((.....).)).... ( -26.02) >DroSec_CAF1 23116 108 + 1 GAAAACGCGAACCAAAGUGCGGCAGAGUAAUGCUCUUAGACCGAAAGGUUUUCAAAAGCGUUCGAAAA--AAGCUUGCCGAACGGAAAGUGUA----------CGCCAAAUGGAGCUAAA ......((...(((..((.(((((.(((((((((...(((((....))))).....))))))......--..)))))))).))((...(....----------).))...))).)).... ( -28.20) >DroSim_CAF1 12070 108 + 1 GAAAACGCGAACCAAAGUGCGGCAGAGUAAUGCUCUUAGACCGAAAGGUUUUCAAAAGCGUUCGAAAA--AAGCGUGCCGAACGGAAAGUGUA----------CGCCAAAUGGAGCUAAA ......((...(((..((.(((((..((((((((...(((((....))))).....))))))......--..)).))))).))((...(....----------).))...))).)).... ( -27.40) >DroYak_CAF1 20187 118 + 1 GAAAGCGCCAAGCGAAGUGCGGCAGCGUAAUGCUCUUAGACCGAAAGGUUUUCAAAAGCGUUCGAAAA--AUGCGUGCUGAACGAAAAGUGGAACGUGGAAAGCGCCAAAUGGAACUAAA ...((..(((.((.....))(((.((............((((....))))(((....((((((.(...--...(((.....))).....).)))))).))).)))))...)))..))... ( -31.40) >consensus GAAAACGCGAACCAAAGUGCGGCAGAGUAAUGCUCUUAGACCGAAAGGUUUUCAAAAGCGUUCGAAAA__AAGCGUGCCGAACGGAAAGUGUA__________CGCCAAAUGGAGCUAAA ....((((........((.(((((.(((((((((...(((((....))))).....))))))..........)))))))).)).....))))............................ (-22.43 = -22.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:29 2006