Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 613,955 – 614,047 |
Length | 92 |
Max. P | 0.862595 |
Location | 613,955 – 614,047 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 74.88 |
Mean single sequence MFE | -29.15 |
Consensus MFE | -13.77 |
Energy contribution | -15.65 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.05 |
Mean z-score | -2.42 |
Structure conservation index | 0.47 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 613955 92 + 22224390 AACUUGGGUCUAGCU----------GCAGGCAGCCUAAUUAAUACUUAAUUUCGGUUGUUUUAGCUGCUAAGCUAGACCAACUCCACAGCC------U---AUCUAAUCUG ......(((((((((----------((((((((((.(((((.....)))))..)))))).....))))..)))))))))............------.---.......... ( -27.80) >DroSec_CAF1 78975 92 + 1 AACGUGGGGCUAGCU----------GCAGGGAGACUAGUUACAACUUCAUUUCGGUUGUUUUAGCUGCUAAGCUAGACCAGCUCCACAACC------U---AUCUAAUUUG ...((((((((((((----------...((.((.((((..((((((.......)))))).)))))).)).)))).....))))))))....------.---.......... ( -28.10) >DroSim_CAF1 78614 92 + 1 AACGUGGGGCUAGCU----------GCAGGGAGCCUAGUUACAACUUCAUUUCGGUGGUUUUAGCUGCUAAGCUAGACCAGCUCCACAACC------U---AUCUAAUCUG ...((((((((.(((----------(...((((...........))))....))))(((((.((((....)))))))))))))))))....------.---.......... ( -28.90) >DroYak_CAF1 82628 106 + 1 AAUUUGGGGCUGGCUAUCAGCUAGUG-AUGGAGCCUAGUUAGCACUCCACUUCUGUUAUUUUAGCUGCUGAAGUAGACCAGCUCCACCGCCACCAGAUUAGAUA----CUU ....((((((((((((((((((((((-((((((...(((....)))....)))))))))..)))))).....)))).)))))))))..................----... ( -31.80) >consensus AACGUGGGGCUAGCU__________GCAGGGAGCCUAGUUACAACUUCAUUUCGGUUGUUUUAGCUGCUAAGCUAGACCAGCUCCACAACC______U___AUCUAAUCUG ...((((((((..................((((...........))))...........(((((((....)))))))..))))))))........................ (-13.77 = -15.65 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:42 2006