Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,655,255 – 4,655,362 |
Length | 107 |
Max. P | 0.507390 |
Location | 4,655,255 – 4,655,362 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.90 |
Mean single sequence MFE | -37.90 |
Consensus MFE | -28.33 |
Energy contribution | -29.89 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.38 |
Structure conservation index | 0.75 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507390 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4655255 107 + 22224390 AGACCUGGCCAGGAUUU--UGGGGCCCGACU----AGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGUG----CGUGUGUGUUGGG---G ...(((((((((((...--(((((((((...----.((........)).....))).)))))).))))))))..........(((((((.((((....)----))).)))))))))---) ( -38.50) >DroSec_CAF1 16913 108 + 1 AGACCUGGCCAGGAUUU--UGGGGCCCGACU----AGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGUG----CGUGUGUGUUGGGG--G ...(((((((((((...--(((((((((...----.((........)).....))).)))))).))))))))..........(((((((.((((....)----))).))))))))))--. ( -39.80) >DroEre_CAF1 17538 112 + 1 ACACCCGGCCAGGAUUU--CGGGGCCCGACU----AGCGAUUUCCGGCAUUUGUGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGCGUGUGCGAGUGUGUUGGGGG-- ...(((((((((((...--.((((((((...----.((........)).....))).)))))..))))))))..........(((((((..((..(....)..))..)))))))))).-- ( -37.90) >DroYak_CAF1 13137 120 + 1 AAACCUGGCCAGGAUUUUUGGGGGCCCGACUAGCUAGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUAUGUGUGCGUUGUUGUUGGUGGGG ...(((((((((((......((((((((....((..(......)..)).....))).)))))..)))))))).........((((((..((((..(....)..))))..)))))).))). ( -35.40) >consensus AGACCUGGCCAGGAUUU__UGGGGCCCGACU____AGCGAUUUCCGGCAUUUGCGGAGCCUCAUUUCUGGUUUAUUAUAAUUCAACACGAAUGUGUGUG____CGUGUGUGUUGGGG__G ......((((((((.....(((((((((........((........)).....))).)))))).)))))))).........((((((((.((((........)))).))))))))..... (-28.33 = -29.89 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:23 2006