Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,655,113 – 4,655,233 |
Length | 120 |
Max. P | 0.558836 |
Location | 4,655,113 – 4,655,233 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.91 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -21.50 |
Energy contribution | -22.25 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.36 |
Structure conservation index | 0.87 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558836 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4655113 120 + 22224390 CCAUCCCUUCAUUCCCCUAUUCACCCACCUAUUCCACCCAUUUCCAAUCCGGGUGAUCCAGCUCUCCGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGUGCCCCGGUCUCCGGACUC ....................((((((........................))))))...........(((((((...(((((......)))))....)))).)))((((...)))).... ( -25.56) >DroSec_CAF1 16791 100 + 1 CCAUUCCCCUAU--------------------UCCGCCCGUUUCCAAUCCGGGUGAUCCAGCUCUCCGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGUGCCCCGGUCUCCGGACUC ............--------------------..((((((.........))))))............(((((((...(((((......)))))....)))).)))((((...)))).... ( -26.80) >DroEre_CAF1 17397 102 + 1 CCAACCCC-CACCUC-----------------CCCCUCCGUUCACAAUCCGCUUGAUCCAGCUCUCCGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGUGCCCCGGUCUCCGGACUC ........-......-----------------....((((..........(((......))).....(((((.....(((((((((.........)))))))))..)))))..))))... ( -20.70) >DroYak_CAF1 13005 103 + 1 CCAUCCCCGCAAUAC-----------------CCCAUCCAUUCCCAAUCCGGGUGAUCCAGCUCUCCGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGUGCCCCGGUGUCCGGACUC ......(((..((((-----------------(.(((((...........)))))............(((((((...(((((......)))))....)))).)))..))))).))).... ( -26.30) >consensus CCAUCCCC_CAUU_C_________________CCCACCCAUUCCCAAUCCGGGUGAUCCAGCUCUCCGGCCGUAUUCGUACGUGAGCUCGUAUAUUUUACGUGCCCCGGUCUCCGGACUC ...............................................((((((.((((.(((((..((..((....))..)).)))))((((.....))))......))))))))))... (-21.50 = -22.25 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:22 2006