Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,653,819 – 4,653,912 |
Length | 93 |
Max. P | 0.525945 |
Location | 4,653,819 – 4,653,912 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.56 |
Mean single sequence MFE | -22.13 |
Consensus MFE | -5.42 |
Energy contribution | -6.02 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.61 |
Structure conservation index | 0.24 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.525945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4653819 93 - 22224390 UCAACAGCCAGCCA---GCUGGCAUAAUGAAA---------GAGCUGC-----------G----AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAAAGGGGGCGGUGAA (((((.(((((...---.))))).........---------(((((((-----------(----.........)).)))))))))))............(((..(....)..)))..... ( -23.50) >DroSim_CAF1 4176 89 - 1 UCAACAGCCAGCCC---GCUGGC-UAAUGAAA---------GAGCUGC----------------AAAAACCAGCGACAGCUUGUUGACA-UGUAAAU-AUGUGACAAANNNNNNNNNNNN (((((((((((...---.)))))-).......---------(((((((----------------..........).)))))))))))((-(((....-)))))................. ( -22.20) >DroEre_CAF1 16097 88 - 1 UCAACAGCCAGCUG-------GCAUAAUGGAG---------GAGCUGC-----------G----AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAA-AGGGGCGGUGAA (((...(((..((.-------((((..(.((.---------(((((((-----------(----.........)).)))))).)).)..))))..............-)).)))..))). ( -20.06) >DroYak_CAF1 11678 92 - 1 UCAACAGCCAGCUG---GCG-GCAUAAUGAAA---------GAGCCGC-----------G----AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAAAAGGGGCGGCGAA ......(((.(((.---(((-((.........---------..)))))-----------.----.....((.((....))(((((.(((.((....)).))))))))..))))))))... ( -24.00) >DroAna_CAF1 20178 119 - 1 AAAAAAGUAAGCGAAAAACA-GCAUAAUGAAAAUGAAGAACGAACUGCGGCAGUGUUGCGAGAAAAAACCGAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAACGGGGCGGAUGAG ..........((........-)).....................((((.....((((((..(.......)..)))))).(((((((...((((.....))))..)))))))))))..... ( -20.90) >consensus UCAACAGCCAGCCA___GCU_GCAUAAUGAAA_________GAGCUGC___________G____AAAAACCAGCGACAGCUUGUUGACAAUGUAAAUAAUGUGACAAAAGGGGCGGUGAA ((((((....((.........))................................................(((....)))))))))................................. ( -5.42 = -6.02 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:15 2006