Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,652,264 – 4,652,382 |
Length | 118 |
Max. P | 0.511093 |
Location | 4,652,264 – 4,652,382 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 97.46 |
Mean single sequence MFE | -34.85 |
Consensus MFE | -32.46 |
Energy contribution | -32.65 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -1.57 |
Structure conservation index | 0.93 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511093 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4652264 118 - 22224390 UGCGAAAGAGACGGUUAGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCGCGUG .((.(((((((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))).))....(((((....)))))... ( -37.10) >DroSim_CAF1 2219 118 - 1 UGGGAAAGAGACGGUUGGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCGCGUG ...(((((.((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))).......(((((....)))))... ( -33.20) >DroEre_CAF1 14491 118 - 1 UGCGAAAGAGACGGUUGGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGUUUUUGCGGCAGCUGCCGCGUG ..((((((.((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))))......(((((....)))))... ( -35.50) >DroYak_CAF1 10087 118 - 1 UGCGAAAGAGACGCUUGGGCGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCACGUG .(((((((...(((....))).(((((((((..((((..(((.....)))..))))(((.(((((.....))))).))).......))))))))).)))))))(((....)))..... ( -33.60) >consensus UGCGAAAGAGACGGUUGGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCGCGUG .((.(((((((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))).))....(((((....)))))... (-32.46 = -32.65 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:13 2006