Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,640,937 – 4,641,033 |
Length | 96 |
Max. P | 0.999344 |
Location | 4,640,937 – 4,641,033 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -32.68 |
Consensus MFE | -30.96 |
Energy contribution | -30.76 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -2.02 |
Structure conservation index | 0.95 |
SVM decision value | 3.32 |
SVM RNA-class probability | 0.999005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4640937 96 + 22224390 GGACUUUAAGCUGGAACAGCAGCUGCAAGUCUGUCCACUGGAUGCGAAUGUGGAUGAUGACGUUGACAACGACGAGGAAGGACCAAAGCUGCUGUC ...............(((((((((....((((((((((...........)))))).....(((((....))))).....))))...))))))))). ( -31.30) >DroSec_CAF1 26555 96 + 1 GGACUUUAAGCUGGAGCAGCAGCUGCAAGUCUGUCCACUGGAUGCGAAUGUGGAUGAUGACGUUGACAACGACGAGGAAGGACCAAAGCUGCUGUC ...............(((((((((....((((((((((...........)))))).....(((((....))))).....))))...))))))))). ( -31.60) >DroSim_CAF1 8214 96 + 1 GGACUUUAAGCUGGAGCAGCAGCUGCAAGUCUGUCCACUGGAUGCGAAUGUGGAUGAUGACGUUGACAACGACGAGGAAGGACCAAAGCUGCUGUC ...............(((((((((....((((((((((...........)))))).....(((((....))))).....))))...))))))))). ( -31.60) >DroEre_CAF1 24643 96 + 1 AGAUUUUAAGCUGGAACAGCAGCUGCAAGUCUGUCCACUGCAUGCGAAUGUGGAUGAUGACGUUGACAACGACGAGGAGGAACCAAAGCUGCUGUC ...............(((((((((.....(((.(((.(..(((....)))..).......(((((....))))).)))))).....))))))))). ( -31.40) >DroYak_CAF1 26131 96 + 1 GGAUUUUAAGCUGGAACAGCAGCUGCAAGUCCGUCCACUGGAUGUGAAUGUGGAUGAUGACGUUGACAACGACGUGGAAGGACCAGAGCUGCUGUC ...............(((((((((.(..((((.((((((.(.(((.(((((........))))).))).).).))))).))))..)))))))))). ( -37.50) >consensus GGACUUUAAGCUGGAACAGCAGCUGCAAGUCUGUCCACUGGAUGCGAAUGUGGAUGAUGACGUUGACAACGACGAGGAAGGACCAAAGCUGCUGUC ...............(((((((((....((((((((((...........)))))).....(((((....))))).....))))...))))))))). (-30.96 = -30.76 + -0.20)
Location | 4,640,937 – 4,641,033 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 95.42 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -25.88 |
Energy contribution | -25.72 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -2.25 |
Structure conservation index | 0.92 |
SVM decision value | 3.53 |
SVM RNA-class probability | 0.999344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4640937 96 - 22224390 GACAGCAGCUUUGGUCCUUCCUCGUCGUUGUCAACGUCAUCAUCCACAUUCGCAUCCAGUGGACAGACUUGCAGCUGCUGUUCCAGCUUAAAGUCC ((((((((((..((((.......(.(((.....))).)....(((((...........)))))..))))...)))))))))).............. ( -27.70) >DroSec_CAF1 26555 96 - 1 GACAGCAGCUUUGGUCCUUCCUCGUCGUUGUCAACGUCAUCAUCCACAUUCGCAUCCAGUGGACAGACUUGCAGCUGCUGCUCCAGCUUAAAGUCC ((((((.((...((.....))..)).))))))..........(((((...........)))))..(((((..(((((......)))))..))))). ( -26.60) >DroSim_CAF1 8214 96 - 1 GACAGCAGCUUUGGUCCUUCCUCGUCGUUGUCAACGUCAUCAUCCACAUUCGCAUCCAGUGGACAGACUUGCAGCUGCUGCUCCAGCUUAAAGUCC ((((((.((...((.....))..)).))))))..........(((((...........)))))..(((((..(((((......)))))..))))). ( -26.60) >DroEre_CAF1 24643 96 - 1 GACAGCAGCUUUGGUUCCUCCUCGUCGUUGUCAACGUCAUCAUCCACAUUCGCAUGCAGUGGACAGACUUGCAGCUGCUGUUCCAGCUUAAAAUCU ((((((((((..((((.......(.(((.....))).)....(((((...........)))))..))))...)))))))))).............. ( -25.50) >DroYak_CAF1 26131 96 - 1 GACAGCAGCUCUGGUCCUUCCACGUCGUUGUCAACGUCAUCAUCCACAUUCACAUCCAGUGGACGGACUUGCAGCUGCUGUUCCAGCUUAAAAUCC (((((((((((.(((((.(((((.....(((.((.((........)).)).)))....))))).))))).).)))))))))).............. ( -34.10) >consensus GACAGCAGCUUUGGUCCUUCCUCGUCGUUGUCAACGUCAUCAUCCACAUUCGCAUCCAGUGGACAGACUUGCAGCUGCUGUUCCAGCUUAAAGUCC ((((((((((..((((.......(.(((.....))).)....(((((...........)))))..))))...)))))))).))............. (-25.88 = -25.72 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:09 2006