Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,640,662 – 4,640,776 |
Length | 114 |
Max. P | 0.555107 |
Location | 4,640,662 – 4,640,776 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.73 |
Mean single sequence MFE | -22.25 |
Consensus MFE | -18.40 |
Energy contribution | -19.52 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.04 |
Mean z-score | -1.44 |
Structure conservation index | 0.83 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4640662 114 - 22224390 AUCCUCAUUUCUUCCUAUGCAUGGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUUGCUCGCUCCCAAGAGUCCUGCGUCCUUCCGACCCAUUGCAGACCCGUUCUUCUUCUU------ .................((((..(((((.(......((((.((..(((.....))).))..((((....))))..)))).....).)))))..)))).................------ ( -23.80) >DroSec_CAF1 26286 113 - 1 AUCCUCAUUUCUUUCUGUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCGCUCGCUCCCAAGAGACCUGCGUCCUUCC---CCAUUGCCGCCCCGUUCUUCUUAUUCU---- ................(.(((.((((..((...............(((.....)))(((...(((....)))....)))..))..)---))).))))...................---- ( -18.60) >DroEre_CAF1 24368 117 - 1 AUCACCAUUUCUGCCAAUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCGCUCGCUCCCAAGAGUCCUGCGUCCUUCCGACCCAUUGCCACCCGUUCC--CUUAUCCUGCC- ..................(((.((((((.................(((.....)))(((..((((....))))...))).......)))))).)))..........--...........- ( -23.80) >DroYak_CAF1 25855 120 - 1 AUCUUAAUUUCUUCCAAUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCACUCGCUCCCAAGAGUCUUGCGUCCUUCCGACCCACUGCCACCCCGUCCUCCUUCUCCUCCCU ..................(((.((((((.(((....)))((((...(((((.(((......)))....)))))...))))......)))))).)))........................ ( -22.80) >consensus AUCCUCAUUUCUUCCAAUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCGCUCGCUCCCAAGAGUCCUGCGUCCUUCCGACCCAUUGCCACCCCGUCCUUCUUAUCCU____ ..................(((.((((((.(((....)))((((..(((.....))).((((........))))...))))......)))))).)))........................ (-18.40 = -19.52 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:07 2006