Locus 1627

Sequence ID X_DroMel_CAF1
Location 4,638,752 – 4,638,864
Length 112
Max. P 0.652440
window2668

overview

Window 8

Location 4,638,752 – 4,638,864
Length 112
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 93.18
Mean single sequence MFE -39.79
Consensus MFE -32.44
Energy contribution -32.00
Covariance contribution -0.44
Combinations/Pair 1.12
Mean z-score -1.45
Structure conservation index 0.82
SVM decision value 0.25
SVM RNA-class probability 0.652440
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4638752 112 + 22224390
UUCAUUCAGCAAAUACCAAUAAUAGACACGUACGGCAAGAGCCGUGCGAGUGGGACG---GCCAUCUGGUGUGCGACAGAGACGGCCGUAUGC--GACGCUGUGUGCGGCGAAGAAA
....(((.(((..............((.((((((((....)))))))).))...(((---(((.((((........))))...)))))).)))--..(((((....)))))..))). ( -43.90)
>DroSec_CAF1 24419 114 + 1
UUCAUUCAGCAAAUACCAAUAAUAGACACGUACGGCAAGAGCCGUGCGAGUGGGACGGCGGCCAUCUGCUGUGCGACAGAGACGGACGUAUGC--GG-GCUGUGUGCGGCGAAGAAA
(((.(((.((.....((...........((((((((....)))))))).((.(.(((((((....))))))).).))......)).(((((((--..-...))))))))))))))). ( -41.70)
>DroSim_CAF1 6056 114 + 1
UUCAUUCAGCAAAUACCAAUAAUAGACACGUACGGCAAGAGCCGUGCGAGUGGGACGGCGGCCAUCUGGUGUGCGACAGAGACGGACGUAUGC--GG-GCUGUGUGCGGCGAGGAAA
(((.(((.....................((((((((....)))))))).((.(.(((.(((((.((((........))))......((....)--))-))))))).).)))))))). ( -37.80)
>DroEre_CAF1 22502 110 + 1
UUCAUUCAGCAAAUACCAAUAAUAGACACGUACGGCCAGAGCCGUGCGAGUGGGACG---GCCAUCUGGUGUGCGAGAGAGACGGGCGUAUGC---G-GCUGUGUGCGGCGGAGAAA
(((.(((.(((.(..((...........((((((.((((((((((.(.....).)))---))..))))))))))).........))..).)))---.-((((....)))))))))). ( -36.75)
>DroYak_CAF1 23903 113 + 1
UUCAUUCAGCAAAUACCAAUAAUAGACACGUACGGCAAGCGCCGUGCGAGUGGGACG---GCCAUCUGGUGUGCGACAGAGACGGGUGUAUGUUCGG-GCUGUGUGCGGCGAAGAAA
(((.(((((((.(((((...........((((((((....)))))))).((.(.(((---.((....))))).).)).......))))).))))...-((((....)))))))))). ( -38.80)
>consensus
UUCAUUCAGCAAAUACCAAUAAUAGACACGUACGGCAAGAGCCGUGCGAGUGGGACG___GCCAUCUGGUGUGCGACAGAGACGGACGUAUGC__GG_GCUGUGUGCGGCGAAGAAA
(((.(((.(((..(((((..........((((((((....)))))))).((((........)))).))))))))..........(.((((..(........)..)))).))))))). (-32.44 = -32.00 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:06 2006