Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,632,914 – 4,633,011 |
Length | 97 |
Max. P | 0.795644 |
Location | 4,632,914 – 4,633,011 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 71.73 |
Mean single sequence MFE | -23.29 |
Consensus MFE | -7.22 |
Energy contribution | -7.86 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.17 |
Mean z-score | -1.86 |
Structure conservation index | 0.31 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4632914 97 + 22224390 UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUUUGGCAUUUGGCCA-----------------------GUUUGCAAUUCGUUUGCUGCCAGCCGCAUGAUA .((((.((((((((((.......))))).(((((..((((((((((((...........)))).-----------------------))))))))......)))))..))))).)))).. ( -29.30) >DroSec_CAF1 19204 83 + 1 UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGUCCCU-------UUGGCCA-----------------------GUUCGCAGUGCGUUUG-------CCGCACGCUA .....((((((((....((((.((((..........))))..))))....-------)))))))-----------------------)...((.(((((....-------.))))))).. ( -19.10) >DroSim_CAF1 695 82 + 1 UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGC-CU-------UUGGCCA-----------------------GUUUGCAGUGCGUUUG-------CCGCACGCUA ......((((.........)))).......(((....((((((((((-(.-------..)))).-----------------------)))))))(((((....-------.)))))))). ( -25.80) >DroEre_CAF1 17244 92 + 1 CUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUUGGA-AUUUGGCAU-----------------------GUCCGCAUUUUGGUCU----CCCUCGAAUGCUA .................((((((.((((((((....(((....)))...)))))-)))))))))-----------------------....((((((.((...----.))..)))))).. ( -19.10) >DroYak_CAF1 18310 116 + 1 UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUUGGCCAUUUUCCAUUUCACUAUUUGCACUUCGUUUGCGUCCGCAUUUUGGUCU----CUGUCGCUUGCUA ......((((.........))))...............(((((((((....(((((.................(((....((....))...)))...))))).----..))))))))).. ( -23.15) >consensus UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUU_G__AUUUGGCCA_______________________GUUCGCAGUUCGUUUG____C__CCGCAUGCUA ........(((.((.((((((..........)))))).)).)))...............................................((.(((((............))))))).. ( -7.22 = -7.86 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:00 2006