Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,632,755 – 4,632,874 |
Length | 119 |
Max. P | 0.773464 |
Location | 4,632,755 – 4,632,874 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.98 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -29.48 |
Energy contribution | -29.28 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.05 |
Mean z-score | -1.39 |
Structure conservation index | 0.88 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773464 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4632755 119 + 22224390 GUAAUCGGUUUUUGGCAUUUGCUUUGCUGAACGCCAUUAUUUUU-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUCAGCAUAUUGGUAG .....((((.(((((((.......)))(((.((((.......((-((((((....))))))))...))))))).....)))).))))..((((((...((((......)))))))))).. ( -31.30) >DroSec_CAF1 19047 119 + 1 GUAAUCGGUUUUGGGCAUUUGCUUUGCUGAACGCCAUUAUUUUU-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCGCAAAUACCGUCGCUAAUUCCAUGCCCCUUGGCAUAUUGGUAG .....((((((((((((.......))))((.((((.......((-((((((....))))))))...))))))......)))).))))..((((((...(((((....))))))))))).. ( -34.10) >DroSim_CAF1 538 119 + 1 GUAAUCGGUUUUUGGCAUUUGCUUUGCUGAACGCCAUUAUUUUC-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUUGGCAUAUUGGUAG .....((((.(((((((.......)))(((.((((...(((...-((((((....)))))))))..))))))).....)))).))))..((((((...(((((....))))))))))).. ( -32.30) >DroEre_CAF1 17087 119 + 1 GUAAUCGGUUUUUGGCAUUUGCUUUGCUGGACGCCAUUAUUUUC-GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCCCAGCAUAUUGGCAG .....((((.(((((((.......)))..((((((...(((...-((((((....)))))))))..))))))......)))).))))..((((((...((((......)))))))))).. ( -35.50) >DroYak_CAF1 18152 120 + 1 GUAAUCGGUUUUUGGCAUUUGCUGUGCUGGACGCCAUUAUUUUCUGGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUCAGCAUAUUGGUAG .....((((.((((((((.....))))..((((((...((....(((((((....)))))))))..))))))......)))).))))..((((((...((((......)))))))))).. ( -34.20) >consensus GUAAUCGGUUUUUGGCAUUUGCUUUGCUGAACGCCAUUAUUUUC_GGUGCAACAAUGCGCUAAUUAGGCGUCGAUUCCCAAAUACCGUCGCUAAUUCCAUGCCCCUCAGCAUAUUGGUAG .....((((.(((((((.......)))(((.((((...(((....((((((....)))))))))..))))))).....)))).))))..((((((...((((......)))))))))).. (-29.48 = -29.28 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:59 2006