Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 595,072 – 595,167 |
Length | 95 |
Max. P | 0.553110 |
Location | 595,072 – 595,167 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 84.12 |
Mean single sequence MFE | -18.95 |
Consensus MFE | -12.18 |
Energy contribution | -12.38 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.31 |
Mean z-score | -1.81 |
Structure conservation index | 0.64 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 595072 95 + 22224390 ---GUUAUCCGUUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUGUUUUCCAUUAAACAAACAGGUUGAGCA ---.......(((((((......(((((((....)))))))..........((((....))))......(((((......))))).....))))))). ( -20.60) >DroSec_CAF1 59601 95 + 1 ---GUUAUCCGCUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUUUUCUCCAUUAAACAAACAGGAUGAGCA ---.......(((((((......(((((((....)))))))((((((.....))))))....))..........(((............)))))))). ( -18.70) >DroSim_CAF1 59638 95 + 1 ---GUUAUCCGCUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUGUUCUCCAUUAAACAAACAGGAUGAGCA ---.......(((((((......(((((((....)))))))((((((.....))))))....))..........(((............)))))))). ( -18.70) >DroEre_CAF1 60550 90 + 1 ---GGUAACCGCGCAGCAGAACACUUUUGUGACCACAAAG-----CGAAACCGAGUUUGCUCACCGAAAUGUUCUCCAUUAAACAAACAGGAUGAGCA ---(((...(((.........(((....)))........)-----))..))).....((((((((....((((........))))....)).)))))) ( -19.63) >DroYak_CAF1 62574 93 + 1 GAAGGAAUCCGCUUGGCAAAACACUUUUGCAACCACAGAA-----UCAAAUCGAGUUUGCUCGCCAAAACGUUCGCCACUAAACAAGCAGUUUGAGCA ..........((((((((((.....))))).......(((-----(.....((((....)))).......)))).........))))).......... ( -17.10) >consensus ___GUUAUCCGCUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUGUUCUCCAUUAAACAAACAGGAUGAGCA ..........(((((........(((((((....)))))))..........((((....)))).............................))))). (-12.18 = -12.38 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:39 2006