Locus 1619

Sequence ID X_DroMel_CAF1
Location 4,630,430 – 4,630,550
Length 120
Max. P 0.562062
window2649

overview

Window 9

Location 4,630,430 – 4,630,550
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.39
Mean single sequence MFE -47.15
Consensus MFE -26.38
Energy contribution -26.39
Covariance contribution 0.00
Combinations/Pair 1.23
Mean z-score -1.88
Structure conservation index 0.56
SVM decision value 0.06
SVM RNA-class probability 0.562062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4630430 120 - 22224390
GGCCACGGCAGGUCCGUACUGGCCCAGGCUGUUCAUCAACUUGCGAACUACGGUGAUGGAGAAAUUCCGCCGGAUGAGGCAAUCCGCCAGGAUGCCAAACACAAUGGCCAGAAUCCACAU
(((((((((.((((......))))...)))))(((((..(....).....(((((..(((....)))))))))))))((((.(((....))))))).........))))........... ( -40.70)
>DroPse_CAF1 47614 120 - 1
GGCCAGGGCCGGGCCGUACUGCCCGAAGCUGUUCAUGAUCUUCCGCGUGGCCGUAAUGGAUAGCCUGUGGCGAAUGAGGCCGUCGGCCACAAUGGCAAACACGAUGGCCAUCAGCCACAU
(((....)))((((......))))...(((((((((...(..((....))..)..))))))))).((((((...((((((((((((((.....))).....)))))))).))))))))). ( -53.30)
>DroSec_CAF1 16854 120 - 1
GGCCAGGGCGGGUCCGUACUGGCCCAGGCUGUUCAUCAACUUGCGGACUACGGUGAUGGAACAGUUCCGCCGGAUGAGGCAAUCCGCCAGGAUGCCAAAUACAAUGGCCAAAAUCCACAU
((((((..((....))..))))))..(((((((..(((.((.(((((..((.((......)).))))))).)).)))((((.(((....)))))))......)))))))........... ( -47.60)
>DroEre_CAF1 14812 120 - 1
GGCCAAGGCUGGUCCGUACUGGCCCAGACUGUUCAUCAGCUUGCGGACAGCGGUGAUGGAGCAGCUCCUGCGGAUGAGGCAAUCCGCCACGACGCCAAACACAAUGGCCAGAAUCCACAU
(((((..((((.(((((((((...))).(((.....)))..))))))))))((((..((((...)))).((((((......)))))).....))))........)))))........... ( -44.70)
>DroYak_CAF1 15314 120 - 1
UGCCAAGGCGGGUCCAUACUGGCCCAGGCUGUUCAUCAGCUUGCGCACCACCGUGAUGGAGCAGUUCCGCCGGAUGAGGCAAUCCGCCACAAUGCCAAACACAAUGGCUAGUAUCCACAU
......((((((.....((((((.(((((((.....))))))).)).(((......)))..))))))))))(((((.(((.....))).....((((.......))))...))))).... ( -43.30)
>DroPer_CAF1 51441 120 - 1
GGCCAGGGCCGGGCCGUACUGCCCGAAGCUGUUCAUGAUCUUCCGCGUGGCCGUAAUGGAUAGCCUGUGGCGAAUGAGGCCGUCGGCCACAAUGGCAAACACGAUGGCCAUCAGCCACAU
(((....)))((((......))))...(((((((((...(..((....))..)..))))))))).((((((...((((((((((((((.....))).....)))))))).))))))))). ( -53.30)
>consensus
GGCCAGGGCCGGUCCGUACUGGCCCAGGCUGUUCAUCAACUUGCGCACGACCGUGAUGGAGAAGCUCCGCCGGAUGAGGCAAUCCGCCACAAUGCCAAACACAAUGGCCAGAAUCCACAU
(((((.((((((((......)))))..)))..(((((.....(((((..................)))))..)))))(((.....)))................)))))........... (-26.38 = -26.39 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:49 2006