Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,626,536 – 4,626,630 |
Length | 94 |
Max. P | 0.573764 |
Location | 4,626,536 – 4,626,630 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.63 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -14.46 |
Energy contribution | -14.41 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.22 |
Structure conservation index | 0.65 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573764 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4626536 94 + 22224390 UUCCCCAAUC-------------UCGA-GUCCUUCGCCCUAGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCAGAAAAUG--UGGCCUUUCAU ..........-------------..((-(......((....)).(((((((.......((((((....)))))).((((((.....))))))..)))--))))..))).. ( -23.40) >DroPse_CAF1 42998 81 + 1 UCUCCCCA-----------------------------UCUCUCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGUGUCUGUCAGAAAGGCACAAAAUGUGUGGCCCACGGU ........-----------------------------.......((((((((....(((....)))....((((((((.......))))))))..))))))))....... ( -21.10) >DroSec_CAF1 13061 95 + 1 UUCCCCAAUC-------------UCGAAGUCCUUCGCCCUAGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCAGAAAAUG--UGGCCUUCCAU ..........-------------..((((......((....)).(((((((.......((((((....)))))).((((((.....))))))..)))--))))))))... ( -25.50) >DroEre_CAF1 11038 94 + 1 UUCUCCAAUC-------------UCGA-GUCCUUCUCCCUCGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCACAAAAUG--UGGCCUUCCAU ..........-------------.(((-(.........))))..(((((((.......((((((....))))))((((.......)))).....)))--))))....... ( -21.40) >DroYak_CAF1 11479 107 + 1 UUCUCCAUUCUCGAUUCAGAAUUUCGA-GUCCUUCGUCCUCGCUGCCGCAUAAUCAGAGCACUUUCAAAGUUGCGUCUGUCAGAAAGGCACAAAAUG--UGGCCUUCCAU .........(((((.........))))-)...............(((((((.......(((((.....)).)))((((.......)))).....)))--))))....... ( -21.40) >DroPer_CAF1 46804 79 + 1 UCUCCCCA-----------------------------UCUCUCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGUGUCUGUCAGAAAGGCACAAAAUG--UGGCCCACGGU ........-----------------------------.......(((((((.....(((....)))....((((((((.......)))))))).)))--))))....... ( -19.70) >consensus UUCCCCAAUC_____________UCGA_GUCCUUCGCCCUCGCCGCCGCAUAAUCAGAGCAAUUUCAAAGUUGCGUCUGUCAGAAAGGCACAAAAUG__UGGCCUUCCAU ............................................(((.......((((((((((....)))))).)))).......)))..................... (-14.46 = -14.41 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:47 2006