Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,612,388 – 4,612,503 |
Length | 115 |
Max. P | 0.574753 |
Location | 4,612,388 – 4,612,503 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.80 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -24.28 |
Energy contribution | -24.78 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.62 |
Structure conservation index | 0.67 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574753 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4612388 115 + 22224390 GAGGGCUG----UA-GGAGAGAGGGAGACAGAGGGAAGACAGAACUGUUGCAAUUACUAUCUAUCUGGUAUUUUAUAACUUUUGUGCUCUUCCUGCUGCCUUACCUCCACACCUCCGCGC ((((..((----(.-((((..((((...(((.(((((((((.((..((((.((.(((((......)))))..)).))))..)).)).))))))).)))))))..)))))))))))..... ( -37.00) >DroSec_CAF1 36459 116 + 1 GAGGGCGG----UGUGGGGAGAGGGAGAGAGAGGGAAGACAGAACUGUUGCAAUUACUAUCUAUCUGGUAUUUUAUAACUUUUGUGCUCUUCCUGCUGCCUUACCUCCGCACCUCCGCGC ...((.((----(((((((.((((.((.....(((((((((.((..((((.((.(((((......)))))..)).))))..)).)).))))))).)).)))).)).))))))).)).... ( -45.00) >DroEre_CAF1 39356 111 + 1 GAGGGAGAGAGCUGUGG--GGAGGGAGAGAGAGGGAAGACAGAACUGUUGCAAUUACUAUCUAUCUGGUAUUUUAUAACUUUUGUGCUCUUCCUGCUGCCUUACCUCAACUCC------- ((((..(((.((.(..(--((((((...(((((....((((....)))).....(((((......)))))........)))))...)))))))..).))))).))))......------- ( -35.30) >DroYak_CAF1 38571 105 + 1 GAGGGAGAGAC--------ACAGAGAGCGAGAGGGAAGACAGAACUGUUGCAAUUACUAUCUAUCUGGUAUUUUAUAACUUUUGUGCUCUUCCUGCUGCCUUACCUCCGCACC------- .((((((((.(--------((((((.((((.((...........)).))))...(((((......))))).........)))))))))))))))..(((.........)))..------- ( -27.90) >consensus GAGGGAGA____UG_GG__AGAGGGAGAGAGAGGGAAGACAGAACUGUUGCAAUUACUAUCUAUCUGGUAUUUUAUAACUUUUGUGCUCUUCCUGCUGCCUUACCUCCACACC_______ ((((................((((.((.....(((((((((.((..((((.((.(((((......)))))..)).))))..)).)).))))))).)).)))).))))............. (-24.28 = -24.78 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:41 2006