Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,611,695 – 4,611,815 |
Length | 120 |
Max. P | 0.941118 |
Location | 4,611,695 – 4,611,815 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -36.53 |
Consensus MFE | -29.98 |
Energy contribution | -30.48 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -3.15 |
Structure conservation index | 0.82 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4611695 120 + 22224390 AAUCUUUGACAUUCCGUGAAAAUACCUGGACGAAGAACUUGAGUCGAAUUCCUGUACGCUUAAAGCGCCCGGCAACUUUUCCGCAAGUUUUUCGCAUUUUCAUGGCAGUCAAUUUGCUAA .....(((((...((((((((((.....(.(((((((((((.(..(((((.(((..(((.....)))..))).)).)))..).))))))))))))))))))))))..)))))........ ( -34.80) >DroSec_CAF1 35776 120 + 1 AAUCUUUGACAUUCCGUGAAAAUACCUGGACGAAGAACUUGGGGCGAAUUCCUGUACGCUUAAAGCGUCCGGCAACUUUUCCGCAAGUUUUUCGCAUUUUCAUGGCAGUCAAUUUGCUAA .....(((((...((((((((((.....(.(((((((((((.((.(((((.(((.((((.....)))).))).)).))).)).))))))))))))))))))))))..)))))........ ( -40.60) >DroEre_CAF1 38670 120 + 1 AAUCUUUGAUAUUCCGUGAAAAUACCUGGACGAAGAACUUGAGGCGAAUUCCUGUACGCUUAAAGCGCCUGGCAACUUUUCUGCAAGUUUUCCGUAUUUUCAUGGCAGUCAAUUUGCUAA .....(((((...((((((((((((..(((....((((((((((((.......(....)......)))))(....).......))))))))))))))))))))))..)))))........ ( -33.92) >DroYak_CAF1 37878 120 + 1 AAUCUUUGAUAUGCCGUGAAAAUACCUGGACGAAGAACUUGAGUCGAAUUCCUGUACGCUUAAAGCGCCAGGCAACUUUUCCGCAAGUUUUCCGCAUUUUCAUGGCAGUCAAUUUGCUAA .....(((((.((((((((((((...((((....(((((((.(..(((((((((..(((.....))).)))).)).)))..).))))))))))).)))))))))))))))))........ ( -36.80) >consensus AAUCUUUGACAUUCCGUGAAAAUACCUGGACGAAGAACUUGAGGCGAAUUCCUGUACGCUUAAAGCGCCCGGCAACUUUUCCGCAAGUUUUCCGCAUUUUCAUGGCAGUCAAUUUGCUAA .....(((((...((((((((((.....(.(((((((((((.((.(((((.(((..(((.....)))..))).)).))).)).))))))))))))))))))))))..)))))........ (-29.98 = -30.48 + 0.50)
Location | 4,611,695 – 4,611,815 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.56 |
Mean single sequence MFE | -34.25 |
Consensus MFE | -31.70 |
Energy contribution | -31.20 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.14 |
Mean z-score | -2.15 |
Structure conservation index | 0.93 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.941118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4611695 120 - 22224390 UUAGCAAAUUGACUGCCAUGAAAAUGCGAAAAACUUGCGGAAAAGUUGCCGGGCGCUUUAAGCGUACAGGAAUUCGACUCAAGUUCUUCGUCCAGGUAUUUUCACGGAAUGUCAAAGAUU ........(((((..((.((((((((((((.((((((.(....((((.((..((((.....))))...))))))...).)))))).)))))......))))))).))...)))))..... ( -33.60) >DroSec_CAF1 35776 120 - 1 UUAGCAAAUUGACUGCCAUGAAAAUGCGAAAAACUUGCGGAAAAGUUGCCGGACGCUUUAAGCGUACAGGAAUUCGCCCCAAGUUCUUCGUCCAGGUAUUUUCACGGAAUGUCAAAGAUU ........(((((..((.((((((((((((.((((((.((...((((.((..((((.....))))...))))))..)).)))))).)))))......))))))).))...)))))..... ( -36.50) >DroEre_CAF1 38670 120 - 1 UUAGCAAAUUGACUGCCAUGAAAAUACGGAAAACUUGCAGAAAAGUUGCCAGGCGCUUUAAGCGUACAGGAAUUCGCCUCAAGUUCUUCGUCCAGGUAUUUUCACGGAAUAUCAAAGAUU ........((((...((.((((((((((((.((((((.((...((((.((..((((.....))))...))))))...)))))))).....)))..))))))))).))....))))..... ( -29.80) >DroYak_CAF1 37878 120 - 1 UUAGCAAAUUGACUGCCAUGAAAAUGCGGAAAACUUGCGGAAAAGUUGCCUGGCGCUUUAAGCGUACAGGAAUUCGACUCAAGUUCUUCGUCCAGGUAUUUUCACGGCAUAUCAAAGAUU ........((((.((((.((((((((((((.((((((.(....((((.((((((((.....)))).))))))))...).)))))).....)))..))))))))).))))..))))..... ( -37.10) >consensus UUAGCAAAUUGACUGCCAUGAAAAUGCGAAAAACUUGCGGAAAAGUUGCCGGGCGCUUUAAGCGUACAGGAAUUCGACUCAAGUUCUUCGUCCAGGUAUUUUCACGGAAUAUCAAAGAUU ........(((((..((.((((((((((((.((((((.((...((((.((..((((.....))))...))))))...)))))))).)))))......))))))).))...)))))..... (-31.70 = -31.20 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:39 2006