Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,611,435 – 4,611,535 |
Length | 100 |
Max. P | 0.998429 |
Location | 4,611,435 – 4,611,535 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 62.06 |
Mean single sequence MFE | -19.17 |
Consensus MFE | -13.95 |
Energy contribution | -12.30 |
Covariance contribution | -1.65 |
Combinations/Pair | 1.44 |
Mean z-score | -1.43 |
Structure conservation index | 0.73 |
SVM decision value | 3.10 |
SVM RNA-class probability | 0.998429 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4611435 100 - 22224390 AAA-----UACCACUUAUAAA---------------UGCAAAAAAACUACACAAACCUGUGAUCUCAGUCGCCAUAACUUGGUCAAAUGAACUCCGAUUCCAGAGAGGCAUACCUUAAAA ...-----............(---------------(((..........((((....)))).((((((((((((.....)))((....))....)))))...)))).))))......... ( -14.60) >DroSec_CAF1 35538 86 - 1 -------------------AA---------------CGCAGAAAAACUACACAUACCUAAGAUCCCAGAUGCCAUAACUUGGCCAAAUGGAUUCCGAUUCUAGAGUGGCGUACCUUAAAA -------------------.(---------------(((((.....)).....((((((..((((((...((((.....))))....))).....)))..))).)))))))......... ( -17.50) >DroEre_CAF1 38391 120 - 1 AAAGGAAAUGAAAUUUAUAACUUUUCGUUCGGACCAUUUACAAUGACCACUUAAGCCUGAAAUCCCAGACGCCAUAACUUGGCCAAAUGGAUUCCGAUUUUGGAGUGGCAUACCGCAAAA ...((.(((((((.........))))))).............(((.((((((.....((.(((((.....((((.....)))).....))))).))......))))))))).))...... ( -25.40) >consensus AAA_____U___A_UUAUAAA_______________UGCAAAAAAACUACACAAACCUGAGAUCCCAGACGCCAUAACUUGGCCAAAUGGAUUCCGAUUCUAGAGUGGCAUACCUUAAAA ........................................................(((.(((((((...((((.....))))....))).....)))).))).((((....)))).... (-13.95 = -12.30 + -1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:37 2006