| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 576,607 – 576,704 |
| Length | 97 |
| Max. P | 0.954397 |
| Location | 576,607 – 576,704 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 85.05 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -19.79 |
| Energy contribution | -21.73 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.93 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954397 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 576607 97 + 22224390 AAAAUCGAAUUCCUUGUGGGCUGCGCAGGCGCAGAAAACCGCAAAAGCCAAAGGGAAUGGGGAAUGUUUGGUGCAGGCAAUAUCCAUAUACCCCAAU ........(((((((((((.(((((....)))))....))))).........))))))((((.(((..((.((....)).))..)))...))))... ( -29.30) >DroSec_CAF1 40290 97 + 1 AAAAUGGAAUUCCCUGUGGGCUGCGCAGGCGCAGAAAACCGCAGAAGGCAAAGGGAAGGGGGAAUGUUUGGGGCAGGUAAUAUCUAUAUACCCCAAU ........(((((((.(((.(((((....)))))....))((.....)).......).)))))))..((((((...(((.....)))...)))))). ( -31.00) >DroSim_CAF1 39897 97 + 1 AAAAUGGAAUUCCCUGUGGGCUGCGCAGGCGCAGAAAACCGCAAAAGGCAAAGGGAAGGGGGAAUGUUUGGGGCAGGUAAUAUCCAUAUACCCCAAU .........((((((..((.(((((....)))))....))((.....))..)))))).((((..(((.((((..........)))).)))))))... ( -30.90) >DroEre_CAF1 42389 79 + 1 AAAAUGGAAUUCCCUGUGGGCUGCGCAGGCGCAGAAAACCACAAAAGCCAAAGG------------------GCGGGCCAUAUCCAUAUACCCCAAU ...(((((...((((((((.(((((....)))))....)))))...(((....)------------------))))).....))))).......... ( -29.10) >consensus AAAAUGGAAUUCCCUGUGGGCUGCGCAGGCGCAGAAAACCGCAAAAGCCAAAGGGAAGGGGGAAUGUUUGGGGCAGGCAAUAUCCAUAUACCCCAAU .........((((((((((.(((((....)))))....))))).........))))).((((..(((.....)))((......)).....))))... (-19.79 = -21.73 + 1.94)
| Location | 576,607 – 576,704 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 85.05 |
| Mean single sequence MFE | -27.10 |
| Consensus MFE | -16.64 |
| Energy contribution | -16.07 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.769601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 576607 97 - 22224390 AUUGGGGUAUAUGGAUAUUGCCUGCACCAAACAUUCCCCAUUCCCUUUGGCUUUUGCGGUUUUCUGCGCCUGCGCAGCCCACAAGGAAUUCGAUUUU ..(((((...(((.....((....)).....))).)))))....(((((((....))((....(((((....))))).)).)))))........... ( -24.90) >DroSec_CAF1 40290 97 - 1 AUUGGGGUAUAUAGAUAUUACCUGCCCCAAACAUUCCCCCUUCCCUUUGCCUUCUGCGGUUUUCUGCGCCUGCGCAGCCCACAGGGAAUUCCAUUUU .((((((((.............))))))))..........((((((..((.....))((....(((((....))))).))..))))))......... ( -27.12) >DroSim_CAF1 39897 97 - 1 AUUGGGGUAUAUGGAUAUUACCUGCCCCAAACAUUCCCCCUUCCCUUUGCCUUUUGCGGUUUUCUGCGCCUGCGCAGCCCACAGGGAAUUCCAUUUU .((((((((...((......))))))))))..........((((((..((.....))((....(((((....))))).))..))))))......... ( -28.90) >DroEre_CAF1 42389 79 - 1 AUUGGGGUAUAUGGAUAUGGCCCGC------------------CCUUUGGCUUUUGUGGUUUUCUGCGCCUGCGCAGCCCACAGGGAAUUCCAUUUU ..........(((((.....(((((------------------(....)))...(((((....(((((....))))).))))))))...)))))... ( -27.50) >consensus AUUGGGGUAUAUGGAUAUUACCUGCCCCAAACAUUCCCCCUUCCCUUUGCCUUUUGCGGUUUUCUGCGCCUGCGCAGCCCACAGGGAAUUCCAUUUU ....(((((.........)))))............................(((((.((....(((((....))))).)).)))))........... (-16.64 = -16.07 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:38 2006