Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,607,396 – 4,607,488 |
Length | 92 |
Max. P | 0.500000 |
Location | 4,607,396 – 4,607,488 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 82.01 |
Mean single sequence MFE | -22.78 |
Consensus MFE | -14.23 |
Energy contribution | -14.73 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -1.67 |
Structure conservation index | 0.62 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4607396 92 + 22224390 ---C--GUGGCUCCUUAGGCUCGG-------------GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------ ---.--(((.....((((((....-------------))))))..(((((((((...(((...(((((....)))))....))).)))))))))...........)))..------ ( -18.10) >DroPse_CAF1 39033 108 + 1 GCAG--GAGGCCUCUUUGGCCAGGACGAGCAUCCGCUGCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------ ((((--..((((.....)))).(((......))).))))......(((((((((...(((...(((((....)))))....))).)))))))))................------ ( -29.10) >DroEre_CAF1 35049 92 + 1 ---C--GUGGCUGCUUAGGCUCGG-------------GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------ ---.--(((.....((((((....-------------))))))..(((((((((...(((...(((((....)))))....))).)))))))))...........)))..------ ( -18.10) >DroWil_CAF1 45937 101 + 1 ---UUUGCCGCCCCUCACAGAG------------GCGGCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUCGCCUUU ---...((((((.(.....).)------------)))))......(((((((((...(((...(((((....)))))....))).)))))))))...................... ( -25.60) >DroYak_CAF1 33913 92 + 1 ---C--GUGGCUCCUUAGACUCGG-------------GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------ ---.--..(((.((........))-------------))).....(((((((((...(((...(((((....)))))....))).)))))))))................------ ( -16.70) >DroPer_CAF1 40081 108 + 1 GCAG--GAGGCCUCUUUGGCCAGGACGAGCAUCCGCUGCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC------ ((((--..((((.....)))).(((......))).))))......(((((((((...(((...(((((....)))))....))).)))))))))................------ ( -29.10) >consensus ___C__GUGGCCCCUUAGGCUCGG_____________GCUUAAUAAAUGCAAAUGUGUCCAAGUAUGAACAAUUAUAGAAAGGAAAUUUGCAUUAAAAAUUUAUGUACUC______ ........((((.....))))........................(((((((((...(((...(((((....)))))....))).)))))))))...................... (-14.23 = -14.73 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:33 2006