Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,604,545 – 4,604,652 |
Length | 107 |
Max. P | 0.587026 |
Location | 4,604,545 – 4,604,652 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.41 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -24.38 |
Energy contribution | -24.38 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.82 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4604545 107 + 22224390 ------------AGGAUCGCUACUGCUAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC-CCCAGCUAAAGUCCCAACUUGCUGUUGAUAUUUUCUUCUUUU ------------.((((.((....)).........(((((...(((((((...(((((.....))))).))))))).-...)))))..))))((((.....))))............... ( -29.40) >DroSec_CAF1 29354 107 + 1 ------------GGGAUCGCUGCUGCUAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC-CCCAGCUAAAAUCCCAACUUGCUGUUGAUAUUUUCUUCUUUU ------------(((((.((((..((((.......))))....(((((((...(((((.....))))).))))))).-..))))....)))))........................... ( -30.50) >DroEre_CAF1 32411 91 + 1 ---------------------------AUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC-CCGAGCUAA-AUCCCAACUUGUUGUUGAUAUUUUCUUCUUUU ---------------------------........(((((...(((((((...(((((.....))))).))))))).-...))))).-....((((.....))))............... ( -25.80) >DroYak_CAF1 31100 120 + 1 ACUCCAGACUGCAGGAUCGCGACUGUCAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGCUCCUGCCCCCCGAGCUAAAAUCCCAACUUGCUGUUGAUAUUCUCUUCUUUU ......(((.(((((.....((.((......))))(((((...(((((((((..((((.....))))))))))))).....))))).........))))).)))................ ( -33.20) >consensus ____________AGGAUCGCUACUGCUAUUUCAUCUGGCUAAUGGCAGGGGUAUCACAUGGAUUGUGGGUCCUGCCC_CCCAGCUAAAAUCCCAACUUGCUGUUGAUAUUUUCUUCUUUU ...................................(((((...(((((((...(((((.....))))).))))))).....)))))......((((.....))))............... (-24.38 = -24.38 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:33 2006