Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,602,368 – 4,602,478 |
Length | 110 |
Max. P | 0.891547 |
Location | 4,602,368 – 4,602,478 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 86.12 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -16.27 |
Energy contribution | -17.65 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.04 |
Mean z-score | -2.26 |
Structure conservation index | 0.71 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891547 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4602368 110 + 22224390 AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGAUGAAAAUUAAAAAAUAUGUCUGCAUAUUCAGCUGUAGGAGUAUAAUGGCAGCGAAGGGAAACUUUUCC- ...........(((((..(((((((((((((((((.....)))............((((..(((((........)))))..))))..)))))).)))))))))))))...- ( -24.60) >DroSec_CAF1 27337 110 + 1 AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGACGAAAAUUAAAAAAUAUGUCUGCAUAUUCAGCUGUAGGAGUAUAAUGGCAGCGAAGGGAAACUUUUGC- ..(((((......(((..(((((((((((((((((.....)))............((((..(((((........)))))..))))..)))))).))))))))))))))))- ( -27.10) >DroEre_CAF1 30316 110 + 1 AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGACGAAAAUUAAAAAAUAUGUUUGCAUAUACAGCUGUAUGAGUAUAAUGGCAGAGAAGGCAAACUUUUCU- (((((((((..((((......)))).(((((.........))))).............))))))))).....(((((.........)))))(((((((.....)))))))- ( -21.70) >DroYak_CAF1 28836 94 + 1 AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCACUCAAAAAGACGAAAAUUAAAAAAUAUGUUUGCAGAGAAA-----------------GCAGAGAAGGGAAACUUUUCCC ...........(((((..(((((((((((((.........)))))...............(((((.......-----------------)))))))))))))))))).... ( -17.80) >consensus AUGCAAACAAUAAAGUAUUUCCUUUCUUGUCAGUCAAAAAGACGAAAAUUAAAAAAUAUGUCUGCAUAUACAGCUGUAGGAGUAUAAUGGCAGAGAAGGGAAACUUUUCC_ ...........(((((.(((((((..(((((((((.....)))............(((((....)))))..................))))))..)))))))))))).... (-16.27 = -17.65 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:30 2006