| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,601,567 – 4,601,683 |
| Length | 116 |
| Max. P | 0.627480 |
| Location | 4,601,567 – 4,601,683 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -32.45 |
| Consensus MFE | -17.06 |
| Energy contribution | -19.20 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4601567 116 - 22224390 UUGCAGCAUAUGAAGUGUAGUCGUAUGAAGGAGUAUUUUAGUUAUUCCAAGUGAAGGCAAACAUAAUGCGCAUAAUGCCGGCAGUGGUUGGCAAAAAUGCUGCCAUUUAAAUGCU----G ..(((((((.....(((((....((((..((((((.......))))))..((....))...)))).)))))....(((((((....)))))))...)))))))............----. ( -34.00) >DroPse_CAF1 32244 111 - 1 CCACAGCAUAUGGA---------UAUGGAUGGGCAUUGCAGUUAUUUCAAAUGAAGGCAAACAUAAUGCACGAAAUGCCAGCAGUUCGACGCAAAAAUGCCAACAUUUAAAUGCUGGCUG ...((((((.((((---------..((....((((((((..((((.....))))..))........(((.((((.((....)).))))..)))..))))))..)))))).)))))).... ( -28.10) >DroSec_CAF1 26575 115 - 1 -UGCAGCAUAUGAAGUGUAGUCGUAUGAGGGAGUAUUUUAGUUAUACCAAGUGAAGGCACACAUAGUGCGCAUAAUGCCAGCAGUGGUUGGCAAAAAUGCUGCCAUUUAAAUGCU----G -.(((.(((((((.......))))))).((.((((((((...........(((...((((.....)))).)))..(((((((....))))))))))))))).)).......))).----. ( -36.00) >DroEre_CAF1 29525 115 - 1 -UGCUGCAUAUGAAGUGCAGUCGUAUGAAGGAGUAUUUUAGUUAUUCCAAGUGAAGGCAAACAUAAUGCGCAUAAUGCCAGCAGUGGUUGGCAAAAAUGCUGCCAUUUAAAUGCU----G -.(((((((.....))))))).((((...((((((.......))))))(((((...(((.......)))((((..(((((((....)))))))...))))...)))))..)))).----. ( -34.50) >DroYak_CAF1 28041 115 - 1 -AGCUGCACAUGAAGUGCAGUCGUAUGAGGGAGUAUUUUAGUUAUUCCAAGUGAAGGCAAACAUAAUGCGCAUAAUGCCAGCAGUGGUUGGCAAAAAUGCUGCCAUUUAAAUGCU----G -.(((((((.....))))))).((((...((((((.......))))))(((((...(((.......)))((((..(((((((....)))))))...))))...)))))..)))).----. ( -36.20) >DroPer_CAF1 33139 107 - 1 CCGCAGCAUAUGGA---------UAUGGAUGGGCAUUGCAGUUAUUUCAAAUGAAGGCAAACAUAAUGCACGAAAUGCCAGCAGCUCGACGCAAAAAUGCCAACAUUUAAAUGCU----G ...((((((.((((---------..((....((((((((..((((.....))))..))........(((.(((..((....))..)))..)))..))))))..)))))).)))))----) ( -25.90) >consensus _UGCAGCAUAUGAAGUG_AGUCGUAUGAAGGAGUAUUUUAGUUAUUCCAAGUGAAGGCAAACAUAAUGCGCAUAAUGCCAGCAGUGGUUGGCAAAAAUGCUGCCAUUUAAAUGCU____G ..((..(((((((.......)))))))..(.((((((((.................(((.......)))......(((((((....))))))))))))))).).........))...... (-17.06 = -19.20 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:26 2006