Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,600,691 – 4,600,803 |
Length | 112 |
Max. P | 0.523574 |
Location | 4,600,691 – 4,600,803 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.06 |
Mean single sequence MFE | -38.13 |
Consensus MFE | -22.26 |
Energy contribution | -21.27 |
Covariance contribution | -0.98 |
Combinations/Pair | 1.35 |
Mean z-score | -1.51 |
Structure conservation index | 0.58 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523574 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4600691 112 + 22224390 ---AAAGCGGUAAUGGAGCUGGGACGUAACCUCUUGGAUAACUUCAGAUUGGAUGUGAAUGAUCAACUCCAAUCUGCUCGAGGGUAAACCUCGAUAACUCAGUCGCAACACGUUA----- ---..((((((..((..((((((......((....)).......(((((((((..(((....)))..))))))))).((((((.....))))))...))))))..)))).)))).----- ( -36.40) >DroSec_CAF1 25522 120 + 1 GACAAAGGGGUGAUGGAGCUGGGACGUAACCCCUUGGAGAACUUCAGAUUGUAUGUGAAUGAUGAACUUCAAUCUGCUCUAGGGUAAACCUGGACAACUCCGUCGCAAUACGUUUCUUCU (((.(((((((.(((.........))).)))))))((((.....(((((((...((.........))..))))))).((((((.....))))))...)))))))................ ( -38.20) >DroEre_CAF1 28494 119 + 1 GACGCAGCGCUGCAGCACCUGGGGCGGAACCUCAUGGGCAACUUCCGAUUGGAUGUGAGCAAUCAACUCCAGGGGGCUCAGGGGUAGCUCUCGACAACUCCAUCGCAACUCGCU-CUUCU ((.(.((((.((((((.(((((((..((..(((((((....))(((....))).)))))...))..)))))))..)))..(((((.((....).).)))))...)))...))))-).)). ( -39.80) >consensus GACAAAGCGGUGAUGGAGCUGGGACGUAACCUCUUGGACAACUUCAGAUUGGAUGUGAAUGAUCAACUCCAAUCUGCUCAAGGGUAAACCUCGACAACUCCGUCGCAACACGUU_CUUCU ......................(((((.......((((......(((((((((.((.........))))))))))).((((((.....))))))....)))).......)))))...... (-22.26 = -21.27 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:25 2006