Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,595,943 – 4,596,049 |
Length | 106 |
Max. P | 0.614632 |
Location | 4,595,943 – 4,596,049 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.02 |
Mean single sequence MFE | -26.77 |
Consensus MFE | -14.43 |
Energy contribution | -16.30 |
Covariance contribution | 1.87 |
Combinations/Pair | 1.08 |
Mean z-score | -2.24 |
Structure conservation index | 0.54 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4595943 106 + 22224390 CUUUUCCCCCCAAGACACUUUUUUC---CC-CCAUUUUUCCACCUCCUUUGUUGCUUUUGCCUUUUGGGC----------UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU ........................(---((-(.(((((((.....((.....((.(((((((...(((..----------..)))..))))))))).....))...))))))).).))). ( -22.30) >DroSec_CAF1 20464 102 + 1 CUUUUUC-CCCAAGACACCUU-UUC---CC-CCAUUUUUCCACCUCUUUUGUUGCUUUUGCCUCU--GGC----------UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU .......-.............-..(---((-(.(((((((..((.....((((....(((((..(--((.----------..)))..))))))))).....))...))))))).).))). ( -21.20) >DroEre_CAF1 23071 101 + 1 CUUUUGC-CUCCAUUCACCUUUUGC------CAAUUUUUCCACCUCCUUUGUUGCUUCUGCCUGU--GGC----------UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGAU .......-............(((((------.((((((((.....((.....((.(((((((.((--((.----------..)))).))))))))).....))...))))))))))))). ( -25.60) >DroYak_CAF1 20480 117 + 1 CUUUUCC-CGCAAUUCACCUUUUGCUCGCCGCAUUUUCCGCAACUCCUUUGCUUCUUUUGCCUGU--GGCAAAAGUCCUGUGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU .....((-(((((((.....(((.((.((((.....(((((((.....))))......((((.((--((((.........)))))).)))))))......)))).)))))))))))))). ( -38.00) >consensus CUUUUCC_CCCAAGACACCUUUUGC___CC_CAAUUUUUCCACCUCCUUUGUUGCUUUUGCCUGU__GGC__________UGCCAUUGGCAGGACAUUUUUGGCUAGAAAAAUUGCGGGU ............................((.(((((((((.....((.....((.(((((((.....(((...........)))...))))))))).....))...))))))))).)).. (-14.43 = -16.30 + 1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:24 2006