Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 39,346 – 39,457 |
Length | 111 |
Max. P | 0.677337 |
Location | 39,346 – 39,457 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 88.59 |
Mean single sequence MFE | -29.45 |
Consensus MFE | -22.66 |
Energy contribution | -22.10 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.24 |
Mean z-score | -1.65 |
Structure conservation index | 0.77 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 39346 111 + 22224390 GGAGUCUUUACUGAUUCUGUUUUACUUGAUUGUGCAUAUAGCGGCUCAGUCUUCUUUAGGCCGUCUUCCUGAACCCGGUGAUUAGACUUAAGUUGUAUGUAAUUGUUCAGA ((((((......))))))......((.(((..(((((((((((((..((......))..)))(((((((((....))).))..))))....))))))))))...))).)). ( -30.70) >DroSec_CAF1 26333 111 + 1 GGAAUCUUCACUGAUUCUGUUUUACUUGAUUGUGCAUAUAGCGGCACAGUCUUGUUUAGGCCCUCUUCCUGAACCCGGUAAUUAAACCUAAGUUGUAUGUAAUUGUUCGGA ((((((......))))))((((.((..((((((((........))))))))..))..)))).......((((((..(((......)))..(((((....))))))))))). ( -27.90) >DroSim_CAF1 26573 111 + 1 GGAAUCUUCACUGAUUCUGUUUUACUUGAUUGUGCAUAUAGCGGCACAGUCUUGUUUAGGCCCUCUUCCUGAACCCGGUAAUUAGACCUAAGUUGUAUGUAAUUGUUCGGA ((((((......))))))((((.((..((((((((........))))))))..))..)))).......((((((..(((......)))..(((((....))))))))))). ( -28.00) >DroEre_CAF1 8820 111 + 1 GGAGUCUUCCCCGAUUCUGUUUUGUUUGGUUGUGCCUAUAGCGGGACAAUCUUGCUUAGGCCGUUUUCCUGAUCCGGGUAAUUAAACUUAUGUUGUAUUUAAUUGUUCGGC ((((((......)))))).....(((.((.((.(((((.((((((.....)))))))))))))....)).)))(((..(((((((((.......))..)))))))..))). ( -31.20) >consensus GGAAUCUUCACUGAUUCUGUUUUACUUGAUUGUGCAUAUAGCGGCACAGUCUUGUUUAGGCCCUCUUCCUGAACCCGGUAAUUAAACCUAAGUUGUAUGUAAUUGUUCGGA ((((((......))))))((((.((..((((((((........))))))))..))..)))).......((((((..........(((....)))..........)))))). (-22.66 = -22.10 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:17 2006