Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,594,681 – 4,594,781 |
Length | 100 |
Max. P | 0.987947 |
Location | 4,594,681 – 4,594,781 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -37.77 |
Consensus MFE | -35.67 |
Energy contribution | -36.33 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -3.22 |
Structure conservation index | 0.94 |
SVM decision value | 2.10 |
SVM RNA-class probability | 0.987947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4594681 100 + 22224390 UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAAACGGCCGGACGGCCAAAUGGCCCUUCAAUGCUUCUUGCUCU .((((((((((((((((((....))))).........((((....))))))))))).........(((.((((....)))).)))...))))))...... ( -41.60) >DroEre_CAF1 21848 95 + 1 UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA-C----GGCCGGCCAAAUGGCCCUUCAAUGGUUCUUGCUCU .(((.(((((((..(((((....)))))((((((...((((....))))..((((....-.----))))((((....)))).)))))))))))..))))) ( -35.60) >DroYak_CAF1 19275 95 + 1 UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA-C----GGCCGGCCAAAUGGCCCUUCAAUGCUACUUGCUCU ..((((.((((((((((((....))))).........((((....)))))))))))...-.----(((((......)))))))))...((.....))... ( -36.10) >consensus UGGAAGCGGGCCAAAUCAGUUAAUUGAUGUUGAAAUCGGGCGAAAGUCCUUGGCCCAAA_C____GGCCGGCCAAAUGGCCCUUCAAUGCUUCUUGCUCU .((((((((((((((((((....))))).........((((....))))))))))).........((..((((....))))..))...))))))...... (-35.67 = -36.33 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:22 2006