Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,592,646 – 4,592,737 |
Length | 91 |
Max. P | 0.941226 |
Location | 4,592,646 – 4,592,737 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.16 |
Mean single sequence MFE | -28.96 |
Consensus MFE | -15.10 |
Energy contribution | -15.91 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -2.37 |
Structure conservation index | 0.52 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4592646 91 + 22224390 UGGCCCAUAACUUUGGGCCCA--CAUCGAUAAAUGGCCAGA------------AAUGUAAG----AGCAUGGGCAAACAUCAAUUGUCCG--AACGUUAA------ACGUGGCCAAG .((((((......))))))..--..........(((((...------------.((((...----.))))((((((.......)))))).--.(((....------.)))))))).. ( -30.20) >DroSec_CAF1 16509 95 + 1 UGGCCCAUAACUUUGGGCCCACACAUCGAUAAAUGGGCAGA------------AAAGCAAGGAGCAGCAUG-GCAAACAUCAAUUGG-CG--AACGUUAA------ACGUGGCCAAG .((((((......))))))........(((.....(.((..------------...((.....))....))-.)....)))..((((-(.--.(((....------.))).))))). ( -25.50) >DroEre_CAF1 19761 92 + 1 UGGCCCAUAACUUUGGGCAU---CAUCAAUAAAUGGCCAGA------GU---CAAAGCAAGGA---ACAUG-GCUAGCAUCAAUUGG-CG--AAAGUUGA------ACGUGGCCAAG ..(((((......)))))..---..........((((((.(------((---((.........---...))-)))........(..(-(.--...))..)------...)))))).. ( -28.20) >DroYak_CAF1 17142 109 + 1 UGGCCCAUAACUUUGGGCGC---CGUCAAUAAAUGGCCAGCAGAAGAAGCAGAAGAGCAAGGA---ACAUG-GCUAGCAUUAAUUGG-CGAGAAAGUUAAACGUUAACGUGGCCUAG .((((..(((((((...(((---((........((((((.........((......)).....---...))-))))........)))-))..))))))).(((....)))))))... ( -31.92) >consensus UGGCCCAUAACUUUGGGCCC___CAUCAAUAAAUGGCCAGA____________AAAGCAAGGA___ACAUG_GCAAACAUCAAUUGG_CG__AAAGUUAA______ACGUGGCCAAG .((((((......))))))..............((((((................(((..............)))..((.....)).......................)))))).. (-15.10 = -15.91 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:20 2006