Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,590,654 – 4,590,762 |
Length | 108 |
Max. P | 0.990190 |
Location | 4,590,654 – 4,590,762 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 75.19 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -16.38 |
Energy contribution | -16.35 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.11 |
Mean z-score | -2.49 |
Structure conservation index | 0.60 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4590654 108 - 22224390 GCCCAUUUCCACAACCACCCACCAACCC----CCCCCCUCCAA-CCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUGCCGUCAAAGACAAGCAUAGAAUGAAGCC-C ((..........................----..((((.....-....))))...(((((((((((((....)))((((......))))........))))))))))..)).-. ( -22.90) >DroPse_CAF1 18172 106 - 1 GCCCAUUGCGGAUGCCG--UGU-----CGGCAUCGGCCGUCGGCCCUCCAGGACACAUUUUGUACGAUAAUUAUCGAUGUCCUUCCGUCACAGACAAGCACAAAAUGAAACC-U (((.((.((.(((((((--...-----))))))).)).)).))).....(((...((((((((.((((....)))).((((...........))))...))))))))...))-) ( -33.90) >DroSec_CAF1 14605 111 - 1 GCCCAUUUCCACCUACA--ACCCACCCCCUACCCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAGCC-C ((...............--...............((((..........))))...(((((((((((((....)))((((......))))........))))))))))..)).-. ( -24.70) >DroSim_CAF1 13922 111 - 1 GCCCAUUUCCACCCCCA--CACCACCCCCUUACCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAGCC-C ((...............--...............((((..........))))...(((((((((((((....)))((((......))))........))))))))))..)).-. ( -24.70) >DroEre_CAF1 17655 99 - 1 GCCCAUUUUCCGC----------CCCCCCUUCCGC----CCCAA-CCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCGCCCGUCAAAGACAAGCACAGAAUGAAGCCCC ...........((----------..........((----(((..-...)))).).(((((((((((((....)))((((......))))........))))))))))..))... ( -26.20) >DroPer_CAF1 19031 106 - 1 GCCCAUUGCGGAUGCCG--UGU-----CGGCAUCGGCCUUCGGCCCUCCAGGACACAUUUUGUACGAUAAUUAUCGAUGUCCUUCCGUCACAGACAAGCACAAAAUGAAACC-U (((.(..((.(((((((--...-----))))))).))..).))).....(((...((((((((.((((....)))).((((...........))))...))))))))...))-) ( -32.60) >consensus GCCCAUUUCCACCGCCA__CAC_ACCCCCUCACCCCCCUUCAACCCCCGGGGACACAUUUUGUGCGAUAAUUAUCGAUGUCCUCCCGUCAAAGACAAGCACAGAAUGAAGCC_C ..................................................((...(((((((((((((....)))((((......))))........))))))))))...)).. (-16.38 = -16.35 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:19 2006