Locus 1595

Sequence ID X_DroMel_CAF1
Location 4,589,865 – 4,589,958
Length 93
Max. P 0.848189
window2616

overview

Window 6

Location 4,589,865 – 4,589,958
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 90.38
Mean single sequence MFE -19.96
Consensus MFE -17.77
Energy contribution -17.82
Covariance contribution 0.06
Combinations/Pair 1.08
Mean z-score -1.63
Structure conservation index 0.89
SVM decision value 0.78
SVM RNA-class probability 0.848189
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4589865 93 + 22224390
UUACAUUGUGUUCAUGAUAUUUAGUUGAAUUUAUGAGCGCUGUUUGAGUUUGUAAAUGAGUUGCUCAUUUAAUGU-UUUAACAUGCACCCCAC---U
.........((((((((.((((....))))))))))))((((((.(((....((((((((...))))))))....-))))))).)).......---. ( -19.20)
>DroGri_CAF1 13211 90 + 1
UUACAUUGUGUUCAUGAUAUUCAGUUGAAUUUAUGAGCGUUGUUUGAGUUUGUAAAUGAGUCACUCAUUUAAUGCCCUUAACAAGCCCC--A-----
.........((((((((.((((....)))))))))))).(((((.(.((...((((((((...))))))))..)).)..))))).....--.----- ( -20.40)
>DroSec_CAF1 13845 93 + 1
UUACAUUGUGGUCAUGAUAUUUAGUUGAAUUUAUGAGCGCUGUUUGAGUUUGUAAAUGAGUUGCUCAUUUAAUGU-UUUAACAUGCAUCUCAC---U
.......(((.((((((.((((....)))))))))).)))....((((..((((((((((...))))))).((((-....))))))).)))).---. ( -19.30)
>DroEre_CAF1 16855 93 + 1
UUACAUUGUGUUCAUGAUAUUUAGUUGAAUUUAUGAGCGCUGUUUGAGUUUGUAAAUGAGUUGCUCAUUUAAUGU-UUUAACAGGCACCCCAC---U
.......((((((((((.((((....))))))))))))))((((((......((((((((...))))))))....-.....))))))......---. ( -20.36)
>DroWil_CAF1 18140 96 + 1
UUACAUUGUGUUCAUGAUAUUUAGUUGAAUUUAUGAGCGCUGUUUGAGUUUGUAAAUGAGUUGCUCAUUUAAUGU-UUUAACAGUUCCUCCUCCUCU
.........((((((((.((((....))))))))))))((((((.(((....((((((((...))))))))....-)))))))))............ ( -20.00)
>DroYak_CAF1 14379 92 + 1
UUACAUUGUGUUCAUGAUAUUUAGUUGAAUUUAUGAGCGCUGUUCGAGUUUGUAAAUGAGUUGCUCAUUUAAUGU-UUUAUCAGGCACCCCAC----
.......((((((((((.((((....))))))))))))))(((..((.....((((((((...))))))))....-....))..)))......---- ( -20.52)
>consensus
UUACAUUGUGUUCAUGAUAUUUAGUUGAAUUUAUGAGCGCUGUUUGAGUUUGUAAAUGAGUUGCUCAUUUAAUGU_UUUAACAGGCACCCCAC___U
.......((((((((((.((((....))))))))))))))((((........((((((((...))))))))........)))).............. (-17.77 = -17.82 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:18 2006