Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,586,473 – 4,586,620 |
Length | 147 |
Max. P | 0.999809 |
Location | 4,586,473 – 4,586,580 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -15.60 |
Energy contribution | -15.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.57 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4586473 107 + 22224390 CUUUAUCCCGACGCUGG-GGUCAUGCAAAUUUUAUGAAUAUCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACGUCACA------------GCACGCAGCUU .....(((((....)))-))(((((.......)))))....((((......(((((((...(......)...)))))))(((((((.....)))).)------------))..))))... ( -25.40) >DroSec_CAF1 10602 106 + 1 CUUUACCCCGUCGCUGU-GGACAUGCAAAUUUUAUG-AUAUCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCACA------------GCACGCAGCUU ........(((.(((((-((.((((.......))))-......(((((..((((((((...(......)...)))))))).)))))......)))))------------)))))...... ( -28.00) >DroSim_CAF1 12049 107 + 1 CUUUACCCCGUCGCUGU-GGCCAUGCAAAUUUUAUGAAUAUCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCACA------------GCACGCAGCUU ........(((.(((((-((.((((.......)))).......(((((..((((((((...(......)...)))))))).)))))......)))))------------)))))...... ( -27.50) >DroEre_CAF1 13582 98 + 1 CUUC---------------GCCAUGCAAAUUUUAUGAAUGUCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCGCAGCAC-------GGCACGCAACUU ....---------------(((.(((........((.((((..(((((..((((((((...(......)...)))))))).)))))...))))..))))).-------)))......... ( -24.40) >DroYak_CAF1 10945 120 + 1 CUUUUCGCAGUUGCGCCGAGCCAUGCAAAUUUUAUGAAUAUCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCCUUACAGCACAGCACAGCGCACAGCACGCAACUU ........(((((((((((((...(((.((.........)).)))......(((((((...(......)...))))))))))))))......((...((.....))...))..)))))). ( -31.30) >consensus CUUUACCCCGUCGCUGU_GGCCAUGCAAAUUUUAUGAAUAUCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCACA____________GCACGCAGCUU .......................(((.........(.....).(((((..((((((((...(......)...)))))))).)))))...........................))).... (-15.60 = -15.60 + -0.00)
Location | 4,586,473 – 4,586,580 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.11 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -22.39 |
Energy contribution | -22.83 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -3.06 |
Structure conservation index | 0.62 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976311 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4586473 107 - 22224390 AAGCUGCGUGC------------UGUGACGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGAUAUUCAUAAAAUUUGCAUGACC-CCAGCGUCGGGAUAAAG ..(((((((((------------(((((......((((((.((((((((..(......)..))))))))..))))))......)))))......)))))...-.))))............ ( -28.80) >DroSec_CAF1 10602 106 - 1 AAGCUGCGUGC------------UGUGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGAUAU-CAUAAAAUUUGCAUGUCC-ACAGCGACGGGGUAAAG ..(((.(((((------------((((.......((((((.((((((((..(......)..))))))))..)))))).(((((-((.......)).))))))-))))).))).))).... ( -38.40) >DroSim_CAF1 12049 107 - 1 AAGCUGCGUGC------------UGUGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGAUAUUCAUAAAAUUUGCAUGGCC-ACAGCGACGGGGUAAAG ..(((.(((((------------(((((((((((((((((.((((((((..(......)..))))))))..)))))).(.....)......)))))))...)-))))).))).))).... ( -38.00) >DroEre_CAF1 13582 98 - 1 AAGUUGCGUGCC-------GUGCUGCGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGACAUUCAUAAAAUUUGCAUGGC---------------GAAG ........((((-------((((((.(((((...((((((.((((((((..(......)..))))))))..))))))..)))))))........)))))))---------------)... ( -32.30) >DroYak_CAF1 10945 120 - 1 AAGUUGCGUGCUGUGCGCUGUGCUGUGCUGUAAGGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGAUAUUCAUAAAAUUUGCAUGGCUCGGCGCAACUGCGAAAAG ........(((..(((((((.(((((((......((((((.((((((((..(......)..))))))))..)))))).(.....).........))))))).)))))))...)))..... ( -44.00) >consensus AAGCUGCGUGC____________UGUGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGAUAUUCAUAAAAUUUGCAUGGCC_ACAGCGACGGGGUAAAG ......(((((............((((((((...((((((.((((((((..(......)..))))))))..))))))..)))).))))......)))))..................... (-22.39 = -22.83 + 0.44)
Location | 4,586,512 – 4,586,620 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.69 |
Mean single sequence MFE | -29.24 |
Consensus MFE | -28.12 |
Energy contribution | -28.12 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.96 |
SVM decision value | 4.13 |
SVM RNA-class probability | 0.999809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4586512 108 + 22224390 UCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACGUCACA------------GCACGCAGCUUGUGCAGCUCGCAAAUUCAUAGUGGGCAACUUUAAAUUUAA ...(((((..((((((((...(......)...)))))))).)))))...........------------(((((.....))))).((((((.........)))))).............. ( -28.40) >DroSec_CAF1 10640 108 + 1 UCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCACA------------GCACGCAGCUUGUGCAGCUCGCAAAUUCAUGGUGGGCAACUUUAAAUUUAA ...(((((..((((((((...(......)...)))))))).)))))...........------------(((((.....))))).((((((.........)))))).............. ( -28.30) >DroSim_CAF1 12088 108 + 1 UCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCACA------------GCACGCAGCUUGUGCAGCUCGCAAAUUCAUGGUGGGCAACUUUAAAUUUAA ...(((((..((((((((...(......)...)))))))).)))))...........------------(((((.....))))).((((((.........)))))).............. ( -28.30) >DroEre_CAF1 13607 113 + 1 UCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCGCAGCAC-------GGCACGCAACUUGUGCAGCUCGCAAAUUCAUAGUGGGCAACUUUAAAUUUCA ...(((((..((((((((...(......)...)))))))).)))))...........((((-------((........)))))).((((((.........)))))).............. ( -28.90) >DroYak_CAF1 10985 120 + 1 UCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCCUUACAGCACAGCACAGCGCACAGCACGCAACUUGUGCAGCUCGCAAAUUCAUAGUGGGCAACUUUAAAUUCAA ...(((((..((((((((...(......)...)))))))).)))))......((((((....(((.......)))...)))))).((((((.........)))))).............. ( -32.30) >consensus UCUGCCAAAAUGGGAAAUAAGCAAAUAAGAACAUUUCCCGCUUGGCUUUACAUCACA____________GCACGCAGCUUGUGCAGCUCGCAAAUUCAUAGUGGGCAACUUUAAAUUUAA ...(((((..((((((((...(......)...)))))))).))))).......................(((((.....))))).((((((.........)))))).............. (-28.12 = -28.12 + -0.00)
Location | 4,586,512 – 4,586,620 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.69 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -27.08 |
Energy contribution | -27.08 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.46 |
Structure conservation index | 0.87 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.850353 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4586512 108 - 22224390 UUAAAUUUAAAGUUGCCCACUAUGAAUUUGCGAGCUGCACAAGCUGCGUGC------------UGUGACGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGA .....((((.(((.....))).))))((((((.((.((((.......))))------------.))..))))))((((((.((((((((..(......)..))))))))..))))))... ( -30.50) >DroSec_CAF1 10640 108 - 1 UUAAAUUUAAAGUUGCCCACCAUGAAUUUGCGAGCUGCACAAGCUGCGUGC------------UGUGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGA ............(((((.....((..((((((.((.((((.......))))------------.))..))))))..))...((((((((..(......)..)))))))).....))))). ( -28.50) >DroSim_CAF1 12088 108 - 1 UUAAAUUUAAAGUUGCCCACCAUGAAUUUGCGAGCUGCACAAGCUGCGUGC------------UGUGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGA ............(((((.....((..((((((.((.((((.......))))------------.))..))))))..))...((((((((..(......)..)))))))).....))))). ( -28.50) >DroEre_CAF1 13607 113 - 1 UGAAAUUUAAAGUUGCCCACUAUGAAUUUGCGAGCUGCACAAGUUGCGUGCC-------GUGCUGCGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGA ..(((((((.(((.....))).)))))))((.(((.((((.......)))).-------..)))))........((((((.((((((((..(......)..))))))))..))))))... ( -31.90) >DroYak_CAF1 10985 120 - 1 UUGAAUUUAAAGUUGCCCACUAUGAAUUUGCGAGCUGCACAAGUUGCGUGCUGUGCGCUGUGCUGUGCUGUAAGGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGA ..(((((((.(((.....))).)))))))....((.(((((.((.((((.....))))...))))))).))...((((((.((((((((..(......)..))))))))..))))))... ( -36.30) >consensus UUAAAUUUAAAGUUGCCCACUAUGAAUUUGCGAGCUGCACAAGCUGCGUGC____________UGUGAUGUAAAGCCAAGCGGGAAAUGUUCUUAUUUGCUUAUUUCCCAUUUUGGCAGA ..(((((((.(((.....))).)))))))(((((((.....)))).))).........................((((((.((((((((..(......)..))))))))..))))))... (-27.08 = -27.08 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:17 2006