Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,582,671 – 4,582,784 |
Length | 113 |
Max. P | 0.857637 |
Location | 4,582,671 – 4,582,784 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 94.05 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -22.79 |
Energy contribution | -22.47 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.10 |
Mean z-score | -1.71 |
Structure conservation index | 0.92 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4582671 113 + 22224390 UUAAUUGUUGAGUUUUCGGUAUUUUCCUUGCCACACACAUCGGAUUAAAUGCGUUGUGUGUGUGUGUGUACACUCUGUGCCUAAUUUUCGUUGGCUACUUUUUAAGCUUUUCC .........(((..((.(((((......((((((((((((..(((.......)))..))))))))).)))......))))).))..)))...((((........))))..... ( -24.90) >DroSec_CAF1 7130 110 + 1 UUAAUUGUUGAGUUUUCGGCAUUUUCCUUGCCACACACAUCGGAUUAAAUGCGUUGUGUGUGUA---GUACACUCUGUGUCUAAUUUUCGUUGGCUACUUUUUGAGCUUUUUC ....(((..((((..(((((...........((((((((.((.((...)).)).))))))))((---(.((((...)))))))......)))))..))))..)))........ ( -24.60) >DroSim_CAF1 7903 110 + 1 UUAAUUGUUGAGUUUUCGGUAUUUUCCUUGCCACACACAUCGGAUUAAAUGCGUUGUGUGUGUA---GUUCACUCUGUGCCUAAUUUUCAUUGGCUACUUUUUGAGCUUUUUC .................((((.......))))(((((((.((.((...)).)).)))))))..(---(((((....(((((...........))).))....))))))..... ( -24.50) >consensus UUAAUUGUUGAGUUUUCGGUAUUUUCCUUGCCACACACAUCGGAUUAAAUGCGUUGUGUGUGUA___GUACACUCUGUGCCUAAUUUUCGUUGGCUACUUUUUGAGCUUUUUC ........((((..((.(((((......(((((((((((.((.((...)).)).)))))))).....)))......))))).))..))))..((((........))))..... (-22.79 = -22.47 + -0.33)
Location | 4,582,671 – 4,582,784 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 94.05 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -19.30 |
Energy contribution | -19.63 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.43 |
Structure conservation index | 0.88 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4582671 113 - 22224390 GGAAAAGCUUAAAAAGUAGCCAACGAAAAUUAGGCACAGAGUGUACACACACACACACAACGCAUUUAAUCCGAUGUGUGUGGCAAGGAAAAUACCGAAAACUCAACAAUUAA ......((((((...((.....)).....))))))...((((.........((((((((.((.........)).))))))))....((......))....))))......... ( -22.20) >DroSec_CAF1 7130 110 - 1 GAAAAAGCUCAAAAAGUAGCCAACGAAAAUUAGACACAGAGUGUAC---UACACACACAACGCAUUUAAUCCGAUGUGUGUGGCAAGGAAAAUGCCGAAAACUCAACAAUUAA ......((((.....).)))..................((((....---...(((((((.((.........)).)))))))((((.......))))....))))......... ( -19.40) >DroSim_CAF1 7903 110 - 1 GAAAAAGCUCAAAAAGUAGCCAAUGAAAAUUAGGCACAGAGUGAAC---UACACACACAACGCAUUUAAUCCGAUGUGUGUGGCAAGGAAAAUACCGAAAACUCAACAAUUAA ...............((.((((((....))).))))).((((....---..((((((((.((.........)).))))))))....((......))....))))......... ( -24.50) >consensus GAAAAAGCUCAAAAAGUAGCCAACGAAAAUUAGGCACAGAGUGUAC___UACACACACAACGCAUUUAAUCCGAUGUGUGUGGCAAGGAAAAUACCGAAAACUCAACAAUUAA ...............((.(((...........))))).((((.........((((((((.((.........)).))))))))....((......))....))))......... (-19.30 = -19.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:14 2006