Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,576,770 – 4,576,865 |
Length | 95 |
Max. P | 0.983037 |
Location | 4,576,770 – 4,576,865 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 76.69 |
Mean single sequence MFE | -14.57 |
Consensus MFE | -9.64 |
Energy contribution | -9.87 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.11 |
Mean z-score | -2.16 |
Structure conservation index | 0.66 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4576770 95 - 22224390 AUAAAUAACACUCAAAAAAACAUUUAAGUGAAAAUUAAAAGAGGGUGGGAAAGUUACAUUUCUUGCACUCGAAAGUAAGCAAUUAUGUUUACGAG ........((((.(((......))).))))..........(((.(..(((((......)))))..).)))....(((((((....)))))))... ( -21.10) >DroSec_CAF1 6309 76 - 1 AUAAAUAACACUUAAAAAAACAUUUAGGC-AAAAUUAAUAAAGGGUGGGAAAGUUGAAUUUCUUGCUU----------------AAGUUUAAG-- .(((((....((((((......)))))).-............(((..(((((......)))))..)))----------------..)))))..-- ( -11.60) >DroSim_CAF1 7058 76 - 1 AUAAAUAACACUUAAAAAAACAUUUAGGC-AAAAUUAAUAAAGGGUGGGAAAGUUGAAUUUCUUGCUU----------------CAGUUUAAG-- .(((((....((((((......)))))).-............(((..(((((......)))))..)))----------------..)))))..-- ( -11.00) >consensus AUAAAUAACACUUAAAAAAACAUUUAGGC_AAAAUUAAUAAAGGGUGGGAAAGUUGAAUUUCUUGCUU________________AAGUUUAAG__ .(((((....((((((......))))))..............(((..(((((......)))))..)))..................))))).... ( -9.64 = -9.87 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:12 2006