Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,574,828 – 4,574,948 |
Length | 120 |
Max. P | 0.591108 |
Location | 4,574,828 – 4,574,948 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.17 |
Mean single sequence MFE | -16.08 |
Consensus MFE | -14.86 |
Energy contribution | -15.90 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.11 |
Structure conservation index | 0.92 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4574828 120 - 22224390 CCUAUUCAUCUUCAUAGCAACAUAUUUCAUUUACCACUUACCGCACAUUUAAUAAAGAGUUCGUUCUGAGCUUGUUAUUUUAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU ...............(((((......................((((.(((((....((((((.....))))))......))))).))))((.((................)).))))))) ( -15.29) >DroSec_CAF1 4487 120 - 1 UCUAUUCAUUUUCAUAGCUACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCUUUCUCAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU ...............(((..(((((((...............((((.((((((((.(((((.......))))).)))))..))).))))......((....))....)))))))...))) ( -13.40) >DroSim_CAF1 5158 120 - 1 UCUAUUCAUUUUCAUAGCUACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCUUUCUCAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU ...............(((..(((((((...............((((.((((((((.(((((.......))))).)))))..))).))))......((....))....)))))))...))) ( -13.40) >DroEre_CAF1 4420 120 - 1 CCUAUUCAUUUUUAUAGCAACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCGUUCUGAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU ...............((((((((((((...............((((.((((((((.((((((.....)))))).)))))..))).))))......((....))....))))))).))))) ( -20.10) >DroYak_CAF1 4570 114 - 1 ------CAUUUUUAUAGCAACGUAUUGCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUUUUUCUAAGCUUGUUAUUGCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU ------.........((((((((((((.......).......((((.((((((((.((((((.....)))))).))))))..)).))))...................)))))).))))) ( -18.20) >consensus CCUAUUCAUUUUCAUAGCAACGUAUUUCAUUUCCCACUUACCGCACAUUUAAUAAAGAGUUCUUUCUCAGCUUGUUAUUUCAAAAGUGCUCUCAAUUUCUUAACAACAAAUGCGAUUGCU ...............((((((((((((...............((((.((((((((.((((((.....)))))).)))))..))).))))......((....))....))))))).))))) (-14.86 = -15.90 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:11 2006