Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,574,379 – 4,574,475 |
Length | 96 |
Max. P | 0.638405 |
Location | 4,574,379 – 4,574,475 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 76.28 |
Mean single sequence MFE | -28.34 |
Consensus MFE | -17.38 |
Energy contribution | -18.26 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.05 |
Mean z-score | -1.63 |
Structure conservation index | 0.61 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4574379 96 + 22224390 UCAAACCGCCCAGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAGCUGGGAGUUCGGAUUGAGAGCUGGCCAUCG---AUGGCGAAUGCUAAAAUA ((((.(((((((((.((((((..((((......))))....))))))))))))....))).)))).((((.((((...---.)))).)..)))...... ( -32.20) >DroSec_CAF1 4068 76 + 1 UCAAACCGCCCGGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAG--------------------CUGGCCAUCG---AUGGCAAAUGCUAAAAUA ........((((((.((((((((........)).))))))))))))((--------------------(..((((...---.))))....)))...... ( -26.50) >DroSim_CAF1 4738 76 + 1 UCAAACCGCCCAGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAG--------------------CUGGCCAUCG---AUGGCAAAUGCUAAAAUA ........((((((.((((((((........)).))))))))))))((--------------------(..((((...---.))))....)))...... ( -27.20) >DroEre_CAF1 3986 84 + 1 UCAAACCGCCCACCUUUCCAGGAUAAUUGGUUCGUUGGGAGUUGGCCAUGGCGA---------------UGGCGAUGGCGAAUGCCGAAUGCCGAACUA ............(((....)))....(((((...((((..(((.(((((.((..---------------..)).))))).))).))))..))))).... ( -26.70) >DroYak_CAF1 4122 93 + 1 UCAAACCGCCCACCUUUCCAGGAUAAUUGGUUCGUUGGGAGUGGGUAGUUGCUAGUC---GUUAGUAGUUGGCCAUCG---AUGGCGAAUGCUAAAAUA ...(((..(((((..((((((((........)).)))))))))))..))).......---.((((((.((.((((...---.)))).)))))))).... ( -29.10) >consensus UCAAACCGCCCAGCCUUCCAGGAUAAUUGGUUCGUUGGGAGCUGGGAG__G__A______________CUGGCCAUCG___AUGGCGAAUGCUAAAAUA .......(((((((.((((((((........)).)))))))))))..........................(((((.....)))))....))....... (-17.38 = -18.26 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:10 2006