Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,573,375 – 4,573,501 |
Length | 126 |
Max. P | 0.758289 |
Location | 4,573,375 – 4,573,466 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 82.94 |
Mean single sequence MFE | -18.82 |
Consensus MFE | -13.02 |
Energy contribution | -13.13 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -1.91 |
Structure conservation index | 0.69 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758289 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4573375 91 - 22224390 CUAACCGCACGCUUCAACUGAAUCACUUUUGAUU------CAAUCAUCUCACUUGUGAUUCCGCGUGAU-UUGCUGGCAAAUUUAAAGCCCUCUUCUC .......(((((.......((((((....)))))------)((((((.......))))))..)))))..-.....(((.........)))........ ( -18.00) >DroSec_CAF1 3062 91 - 1 CUACCCGCACGCUUGAACCGAAUCACUUUUGAUU------CAAUCAUCUCACUUGUGAUUCCGCGUGAU-UUGCUGGCAAAUUUAAAGCCCUCUUCUC .......(((((.......((((((....)))))------)((((((.......))))))..)))))..-.....(((.........)))........ ( -18.30) >DroSim_CAF1 3270 89 - 1 CUAACCGCACGCUUGAACCGAAUCACUUUUGAUU------CAAUCAUCUCACUUGUGAUUCCGCGUGAU--UGCUGGCAAAUUUAAAGCCCUC-UCUC .......(((((.......((((((....)))))------)((((((.......))))))..)))))..--....(((.........)))...-.... ( -18.30) >DroEre_CAF1 2990 72 - 1 CUAACCGCACGCCUGAAUUGAAUCA--------------------------CUUGUGAUUCCGUGUGAUUUUGCUGGCAAAUUUAAAGCCCUCUUGUC .....((((((........((((((--------------------------....))))))))))))........(((.........)))........ ( -14.70) >DroYak_CAF1 3038 97 - 1 CUAAUCGCACGCUUGAAUUGAAUCACUUUUGAUUUUGAUGCAAUCAAGUCACUUGUGAUUCCGUGUGAU-UUGCUGGCAAAUUUAAAGCCCUCUUCUC ..(((((((((........(((((((...((((((.(((...)))))))))...)))))))))))))))-)....(((.........)))........ ( -24.80) >consensus CUAACCGCACGCUUGAACUGAAUCACUUUUGAUU______CAAUCAUCUCACUUGUGAUUCCGCGUGAU_UUGCUGGCAAAUUUAAAGCCCUCUUCUC .......(((((.......(((((((...(((................)))...))))))).)))))........(((.........)))........ (-13.02 = -13.13 + 0.11)
Location | 4,573,396 – 4,573,501 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -21.88 |
Consensus MFE | -13.22 |
Energy contribution | -13.37 |
Covariance contribution | 0.15 |
Combinations/Pair | 1.11 |
Mean z-score | -1.64 |
Structure conservation index | 0.60 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605527 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4573396 105 + 22224390 CCAGCAA-AUCACGCGGAAUCACAAGUGAGAUGAUUG------AAUCAAAAGUGAUUCAGUUGAAGCGUGCGGUUAGCUGAAAAUUUAAUUUGUUAUAUCAAUCGAUAUCUA .((((.(-(((.((((...(((....)))...(((((------(((((....))))))))))....)))).)))).))))...............(((((....)))))... ( -27.30) >DroSec_CAF1 3083 105 + 1 CCAGCAA-AUCACGCGGAAUCACAAGUGAGAUGAUUG------AAUCAAAAGUGAUUCGGUUCAAGCGUGCGGGUAGCAGAAAAUUUAAUUUGUUAUAUCAAUCGAUAUCUA ((.(((.-.....((.(((((((...(((........------..)))...))))))).)).......)))))((((((((........))))))))............... ( -22.72) >DroSim_CAF1 3290 102 + 1 CCAGCA--AUCACGCGGAAUCACAAGUGAGAUGAUUG------AAUCAAAAGUGAUUCGGUUCAAGCGUGCGGUUAGCAAAAAAUU--AUUUNNNNNNNNNNNNNNNNNNNN ...(((--(((.((((...(((....)))..((((((------(((((....)))))))).)))..)))).)))).))........--........................ ( -20.20) >DroEre_CAF1 3011 86 + 1 CCAGCAAAAUCACACGGAAUCACAAG--------------------------UGAUUCAAUUCAGGCGUGCGGUUAGCAGAAAAUUUAAUUUGUUGUAUCAAUCGAUAUCUA .(((((((........((((((....--------------------------))))))..........(((.....)))..........)))))))((((....)))).... ( -16.10) >DroYak_CAF1 3059 111 + 1 CCAGCAA-AUCACACGGAAUCACAAGUGACUUGAUUGCAUCAAAAUCAAAAGUGAUUCAAUUCAAGCGUGCGAUUAGCAGAAAAUUUAAUUUGUUAUAUCAAUCGAUAUCUA ...((.(-(((.(((((((((((...(((.(((((...)))))..)))...)))))))........)))).)))).)).................(((((....)))))... ( -23.10) >consensus CCAGCAA_AUCACGCGGAAUCACAAGUGAGAUGAUUG______AAUCAAAAGUGAUUCAGUUCAAGCGUGCGGUUAGCAGAAAAUUUAAUUUGUUAUAUCAAUCGAUAUCUA ...((...(((.(((((((((((...(((................)))...)))))))........)))).)))..)).................................. (-13.22 = -13.37 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:10 2006