Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,552,287 – 4,552,404 |
Length | 117 |
Max. P | 0.682912 |
Location | 4,552,287 – 4,552,404 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.64 |
Mean single sequence MFE | -47.85 |
Consensus MFE | -28.67 |
Energy contribution | -29.95 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.31 |
Mean z-score | -2.15 |
Structure conservation index | 0.60 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4552287 117 + 22224390 GCUGGCGGAGGUGUGCUUUGGCAAGCCGAAGAAGACGCCGGCCAGCGAGAUCAACGACGUGCCAGUGGGCGCAGAGAUUGA---CGUGGCCAAGGCCAAGGAAAGGAAGGCCAAGCAGGA ((((((...(((((.((((((....))))))...))))).))))))............(((((....))))).....(((.---..(((((....((.......))..)))))..))).. ( -47.30) >DroVir_CAF1 5177 117 + 1 CAUCUCGGAGGUUUGCUUUGGCAAGCCCAAGCGUACGCCACCUGAGGAGAUCAACGAUGUGCCCGUCGGUGAUGCAGCACUUAUGGCUGCCCAGCUGGAAGCAAAGCA---GAAGCAGGA ......((..((.(((((.((....)).))))).)).)).((((.((..((((.(((((....))))).))))(((((.(....)))))))).(((........))).---....)))). ( -38.60) >DroSec_CAF1 4512 117 + 1 GCUGGCGGAGGUGUGCUUUGGCAAGCCGAAGAAGACGCCGGCCAGCGAGAUCAAUGACGUCCCAGUGGGCGCAGAGAUUGA---CGUGGCCAAGGCCAAGGAACGGCAGGCCAAGCAGGA ((((((...(((((.((((((....))))))...))))).))))))..((((..((.(((((....)))))))..))))(.---..(((((...(((.......))).)))))..).... ( -52.10) >DroSim_CAF1 4821 117 + 1 GCUGGCGGAGGUGUGCUUUGGCAAGCCGAAGAAGACGCCGGCCAGCGAGAUCAAUGACGUCCCAGUGGGCGCAGAGAUUGA---CGUGGCCAAGGCCAAGGAACGGCAGGCCAAGCAGGA ((((((...(((((.((((((....))))))...))))).))))))..((((..((.(((((....)))))))..))))(.---..(((((...(((.......))).)))))..).... ( -52.10) >DroEre_CAF1 4458 117 + 1 GCUGGCGGAAGUGUGCUUUGGCAAGCCAAAGAAGACGCCGGCCUGCGAGAUCAACGAUGUGCCAGUGGGCGCAGCGAUUGA---CGUGGCCAAGGCCAAGGAAAGGAAGGCCAAGCAGGA (((((((........((((((....))))))....)))))))((((....((((((.((((((....)))))).)).))))---..(((((....((.......))..))))).)))).. ( -50.40) >DroYak_CAF1 4274 117 + 1 GCUGGCGGAAGUGUGCUUUGGCAAGCCGCGAAGGACGCCGGCCUGCGAGAUCAACGAUGUGCCAGUGGGCGCCGCGAUAGA---CGUGGCCAAGGCCAAGGAGCGGAAGGCCGAGCAGGA (((((((.(.((.((.(((.(((.((((((.....)).)))).))).))).))))..).))))))).(((.((((......---(.((((....)))).)..))))...)))........ ( -46.60) >consensus GCUGGCGGAGGUGUGCUUUGGCAAGCCGAAGAAGACGCCGGCCAGCGAGAUCAACGACGUGCCAGUGGGCGCAGAGAUUGA___CGUGGCCAAGGCCAAGGAAAGGAAGGCCAAGCAGGA ((((((...(((((.((((((....))))))...))))).))))))............(((((....)))))..............((((....))))...................... (-28.67 = -29.95 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:08 2006