Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,544,080 – 4,544,185 |
Length | 105 |
Max. P | 0.883018 |
Location | 4,544,080 – 4,544,185 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.21 |
Mean single sequence MFE | -30.95 |
Consensus MFE | -19.59 |
Energy contribution | -19.78 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.19 |
Mean z-score | -1.92 |
Structure conservation index | 0.63 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.883018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4544080 105 - 22224390 GCGGUUGUUCUUGCUGAUUAUCCUCCAGUUCGGCUCGUCGACAACUGCUGCAGCUGGUGGCAUCGCUGUCCUCCACAAUGGUGCCAUCUUCAUCGUCCUCGUCCU (((((((((...(((((............))))).....)))))))))....(..((((((((((.(((.....))).))))))))))..).............. ( -34.00) >DroVir_CAF1 8920 97 - 1 --------UGAUACUCAGCCUCCUCCAUUUCGGCACGCAGGCAGCUGCUGCAACUGGUUGCGUCGCUGUCCUCCACUAUGGUGUCAUUAUCAUCUUCUUCAACAU --------((((((.(((((...........)))..(.(((((((.((.((((....)))))).)))).))).)....))))))))................... ( -26.00) >DroSec_CAF1 7023 105 - 1 GCGGCUGUUCUUGCUGAUUAUCCUCCAGUUCGGCUCGUCGACAACUGCUGCAGCUGGUGGCAUCGCUGUCCUCCACAAUGGUGCCAUCAUCAUCGUCCUCGUCUU (((((((((...(((((............))))).....))))...))))).(.(((((((((((.(((.....))).))))))))))).).............. ( -32.40) >DroPer_CAF1 679 97 - 1 --------AGCUGCUGCAGCUCCUCCAAUUCGGCGCGACGACAACUGCUGCAACUGGUGGCAUCACUGUCCUCGACAAUGGUGCCAUCAUCUGUGUCUUCAUCCU --------.((....)).((.((........)).))((.(((.......(((..(((((((((((.((((...)))).)))))))))))..)))))).))..... ( -31.41) >consensus ________UCUUGCUGAUUAUCCUCCAGUUCGGCUCGUCGACAACUGCUGCAACUGGUGGCAUCGCUGUCCUCCACAAUGGUGCCAUCAUCAUCGUCCUCAUCCU ........................((((((((((............)))).))))))((((((((.(((.....))).))))))))................... (-19.59 = -19.78 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:06 2006