Locus 1583

Sequence ID X_DroMel_CAF1
Location 4,538,726 – 4,538,822
Length 96
Max. P 0.671061
window2599

overview

Window 9

Location 4,538,726 – 4,538,822
Length 96
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 81.58
Mean single sequence MFE -30.27
Consensus MFE -20.71
Energy contribution -21.83
Covariance contribution 1.13
Combinations/Pair 1.07
Mean z-score -1.72
Structure conservation index 0.68
SVM decision value 0.29
SVM RNA-class probability 0.671061
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4538726 96 - 22224390
GUGUUGUCG---UCUGCCAUUGGCAUUGACAAAGGCUCGCUCGCUCGCUGCUAGUUGCUGGCA-AUGCCCGCAGCUUUCCAACCGAGCC-------------GCUUUUCCUCC
...((((((---..((((...)))).)))))).((((((...((.....)).((((((.(((.-..))).)))))).......))))))-------------........... ( -33.40)
>DroSec_CAF1 1729 92 - 1
GUGUUGUCU---UCUGCCAUUGGCAUUGACAAAGCCUCG----CUCGCUGAUAGUUGCUGGCA-AUGCCUGCAGCUUUCCAACCGAGCC-------------GCUUUUCCUCC
...(((((.---..((((...))))..)))))(((...(----((((..((.((((((.(((.-..))).)))))).))....))))).-------------)))........ ( -31.10)
>DroEre_CAF1 7041 97 - 1
GUGUUGUCUUCUUCUGCCAUUGGCAUUGACAAAGGCCCG------CGCUGCUAGUUGCUGGCAAAUGCCCGCAGCUUUCCAACCGAACCGC----------CGCUUUUCCUCC
(((..(((((..((((((...))))..))..))))).))------)((.((.((((((.(((....))).))))))(((.....)))..))----------.))......... ( -27.20)
>DroYak_CAF1 7697 101 - 1
GUGUUGUCU---UCUGCCAUUGGCAUUGACAAAGGCCU--------GCUGCUAGUUGCUGGCA-AUGCCCGCAGCUUUCCACUCGAACCCCGCACCUCGCUGGCUUUUCCUCU
...(((((.---..((((...))))..)))))(((((.--------(((((.((((((.(((.-..))).))))))(((.....)))....)))....)).)))))....... ( -29.40)
>consensus
GUGUUGUCU___UCUGCCAUUGGCAUUGACAAAGGCCCG______CGCUGCUAGUUGCUGGCA_AUGCCCGCAGCUUUCCAACCGAACC_____________GCUUUUCCUCC
...(((((......((((...))))..))))).((((((.......(.((..((((((.(((....))).))))))...)).)))))))........................ (-20.71 = -21.83 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:14:03 2006