Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 569,776 – 569,870 |
Length | 94 |
Max. P | 0.914422 |
Location | 569,776 – 569,870 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 88.95 |
Mean single sequence MFE | -28.33 |
Consensus MFE | -22.35 |
Energy contribution | -23.04 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.10 |
Mean z-score | -2.22 |
Structure conservation index | 0.79 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 569776 94 + 22224390 CUGCAAAUUGAUGGCGAUGGGCCAUUGGCUGUAUAUGUAUGUAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC ..(((((((((.(((((.((((.(((((..(((((..((........))..)))))))))).)))).)))))....)))))))))......... ( -31.80) >DroSec_CAF1 33551 90 + 1 CUGCGGAUUGAUGGCGAUGGGCCAUUGGUUGUAUAUG----UAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC ..(((((((((.(((((.((((.(((((..(((((..----((....))..)))))))))).)))).)))))....)))))))))......... ( -31.10) >DroSim_CAF1 33076 90 + 1 CUGCGGCUUGAUGGCGAUGGGCCAUUGGUUGUAUAUG----UAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC ..((((.((((.(((((.((((.(((((..(((((..----((....))..)))))))))).)))).)))))....)))).))))......... ( -27.00) >DroEre_CAF1 33969 85 + 1 CUGCGGAUUGAUGGAGAUGGGCUGU-GGCCUUAUAUG----U----GUGUGUGUGCCUAGUUCCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC ..(((((((((.(((((.((((((.-(((..(((((.----.----..))))).)))))).))).)))).).....)))))))))......... ( -23.40) >consensus CUGCGGAUUGAUGGCGAUGGGCCAUUGGCUGUAUAUG____UAUGCUUGUGUGUGCCUAGUUGCCUCUCGCUCACUUCAAUUUGUUUGAUUAGC ..(((((((((.(((((.((((.(((((..((((((..............))))))))))).)))).)))))....)))))))))......... (-22.35 = -23.04 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:30 2006