Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,527,451 – 4,527,559 |
Length | 108 |
Max. P | 0.904564 |
Location | 4,527,451 – 4,527,559 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.16 |
Mean single sequence MFE | -34.32 |
Consensus MFE | -19.27 |
Energy contribution | -19.38 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.33 |
Mean z-score | -2.07 |
Structure conservation index | 0.56 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4527451 108 + 22224390 UA---AUGGCCUCCACCUCCAUUUGCUCCAUUUGCUGUUCGCGCUG------CUGCUGCUGCUCCAGGGCUACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGUAGAGCAUCCAGCU .(---((((.........)))))..........((((...((.(((------(((((((((....(((((.....)).)))...))))).((....)).))))))).))...)))). ( -33.10) >DroVir_CAF1 20322 105 + 1 AG---CUGGCCUCAACCAGCAGCAGUUGC---UGUUGCUGCUGCUG------UUGCUCCCGUUCCAGUGCCACCUGCUGUUCCUCAUCGCGCUCCUGCUGCAGCAGCGCAUUAAGCG .(---((((...((((.(((((((((...---....))))))))))------)))...)).....(((((...(((((((..(.............)..))))))).))))).))). ( -38.32) >DroSec_CAF1 800 108 + 1 UA---AUGGCCUCCACUUCCAUUUGUUCCAUUUGCUGCUCGCGCUG------CUGCUGCUGCUCCAGGGCUACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGUAGAGCAUCCAGCU .(---((((.........)))))..........((((...((.(((------(((((((((....(((((.....)).)))...))))).((....)).))))))).))...)))). ( -33.10) >DroSim_CAF1 358 108 + 1 UA---AUGGCCUCCACCUCCAUUUGCUCCAUUUGCUGUUCGCGCUG------CUGCUGCCGCUCCAGGGCUACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGUAGAGCAUCCAGCU .(---((((.........)))))..........((((...((.(((------(((((((((....(((((.....)).)))...))))).((....)).))))))).))...)))). ( -35.30) >DroEre_CAF1 1624 99 + 1 UU---AUGGCCUCCACCUCCAU---------UUGCUGCUCGCGCUG------CUGCUGCUGUUCCAGAGCCACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGCAGAGCAUCCAGUU ..---((((.........))))---------..((((...((.(((------(((((((((.....((((.....)))).....))))).((....)).))))))).))...)))). ( -31.90) >DroPer_CAF1 1551 105 + 1 UGUAGGUGGCCUCCAUAU------GCUC------CUGCUCCCGCUGCAGUUGCUGCUCCCGCUCCAGAGCCACCUGCUCCUCCUCGGCCCGCUCCUGCUGCAGCAAAGCAUUCAAUU .(((((.(((........------))))------))))....((((((((.(..((..(((.....((((.....)))).....)))...))..).))))))))............. ( -34.20) >consensus UA___AUGGCCUCCACCUCCAUUUGCUCC__UUGCUGCUCGCGCUG______CUGCUGCCGCUCCAGGGCCACCUGCUCCUCCUCGGCACGCUCCUGCUGCAGCAGAGCAUCCAGCU ..........................................((((......(((((((.((....((((....((((.......)))).))))..)).)))))))......)))). (-19.27 = -19.38 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:55 2006