Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,494,422 – 4,494,542 |
Length | 120 |
Max. P | 0.500000 |
Location | 4,494,422 – 4,494,542 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.28 |
Mean single sequence MFE | -38.93 |
Consensus MFE | -18.96 |
Energy contribution | -20.27 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.27 |
Mean z-score | -1.77 |
Structure conservation index | 0.49 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4494422 120 - 22224390 GUAACCAAGUAUCUCGGACAAGCUGACUUUCCCAAGGAAAGUGAGGUGUCUAACUAUAGGGUGAAAAUCAAUAAUGCGGUGCGCGAUACCUUGCGUAGCUGCCCGAGAUCUUUGUUCAUC (.(((.(((.(((((((...((((((((((((...)))))))((((((((.........(((....)))......(((...)))))))))))...)))))..)))))))))).))))... ( -41.60) >DroSec_CAF1 12603 120 - 1 GUCACCAAGUAUCUCGGACAAGCGGACUUUCCCAACGAGAGUCAGGUGGGUAGCUAUAAGGCGAAAAUCAAUUUGGAGGUGCGACAGACCUUGCGCAGCUGUCCGAGAUCUUUGUUCAUC .....((((.((((((((((.((.(((((((.....))))))).(((.....(((....)))....))).........((((((......)))))).)))))))))))).))))...... ( -40.10) >DroSim_CAF1 11381 120 - 1 GUCACCAAGUAUCUCGGACAGGCGGACUUUCCCAACGAGAGUCAGGUGGAUAGCUAUAAGGCGAAAAUCAGUUUGGAGGUGCGACAGACCUUGCGCAGCUGUCCGAGAUCUUUGUUCAUC .....((((.(((((((((((((((((((((.....))))))).(((.....(((....)))....)))......(((((.(....)))))).)))..))))))))))).))))...... ( -41.30) >DroEre_CAF1 18770 120 - 1 GUAACCAAGUAUCUCGGACAGGCGGACUUUCCCAAUCAAAGUAUGGUGGACGCCUAUAAAAAUAGAAUCAAUAUUGAGGUGCGCAACAGCUUGCGCCGCUGCCCGAGAUCCUUGUUCAUC .....((((.(((((((...(((((......(((.(((.....)))))).(((((.....((((.......)))).)))))(((((....))))))))))..))))))).))))...... ( -36.40) >DroYak_CAF1 17711 120 - 1 GUGACCAAGUAUCUGGGACAGGCGGACUUUCCCAACGCGGAUCAAUUGGGCUUCUACAAGAUGAGAAUCAAUUUGGAGGUGCGCAACAGCUUGCGUAGCUGCCCGAGAUCUUUGUUCAUC ((((.(((((...(((((.((.....)).)))))..))(((((..((((((.....((((.((.....)).)))).((.(((((((....))))))).)))))))))))))))).)))). ( -39.10) >DroAna_CAF1 23761 120 - 1 GUAUCCAAGUACCUCGGCCAGGCCGACUUCCCAAUGGCCAGUCACGUUGAUGUGUACAAGGCACGUCUUAAUUAUGAGGUGCGGAAAAAAUUGCAAAAUUGCCCACGUUCCCUAUUCAUC ........((((((((((((((........))..))))).........(((((((.....)))))))........)))))))((((......(((....))).....))))......... ( -35.10) >consensus GUAACCAAGUAUCUCGGACAGGCGGACUUUCCCAACGAGAGUCAGGUGGAUAGCUAUAAGGCGAAAAUCAAUUUGGAGGUGCGCAACACCUUGCGCAGCUGCCCGAGAUCUUUGUUCAUC .....((((.(((((((...(((.(((((((.....)))))))...................................(((((........))))).)))..))))))).))))...... (-18.96 = -20.27 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:50 2006