Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,490,951 – 4,491,045 |
Length | 94 |
Max. P | 0.625275 |
Location | 4,490,951 – 4,491,045 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -39.70 |
Consensus MFE | -26.50 |
Energy contribution | -27.88 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.67 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4490951 94 + 22224390 UGGUGAAAUGCGUU-UAUCGGAUGUGG---AAUAUUCGCAAUGUUUUC--------CCCCUAAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAAA (((((....(((..-(...((..(..(---(((((.....))))))..--------).))...)..))).)))))(((((((((.........))))))))).... ( -34.00) >DroSec_CAF1 9241 94 + 1 UGGGGAAAUGCGUU-CAUCUGAAGUGG---GAUAUUCGCAGAGUUUUC--------CGCCUCAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAUGA (((((....(((..-....(((.((((---((.((((...)))).)))--------))).)))...))))).)))(((((((((.........))))))))).... ( -38.70) >DroSim_CAF1 7980 94 + 1 UGGGGAAAUGCGUU-CAUCUGCUGUGG---GAUAUUCGCAGAGUUUUC--------CGCCUGAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAGA (((((....(((((-((......((((---((.((((...)))).)))--------))).))))..))))).)))(((((((((.........))))))))).... ( -36.60) >DroEre_CAF1 15219 106 + 1 GGGCGAAGUGCGUUUCCUCUGAUGUGGCCUGAUGCUAGCGGCCUUUCCGGCCACGCCCCCUAAGUCCGGGCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAGA .(((...................((((((.((.((.....))...)).))))))((((.........))))))).(((((((((.........))))))))).... ( -49.50) >consensus UGGGGAAAUGCGUU_CAUCUGAUGUGG___GAUAUUCGCAGAGUUUUC________CCCCUAAAUCCGCCCGCCACGCCCCCCCACCUCCUACGGGGGGGCGAAGA .((((...((((...((((...........))))..)))).................((........)).)))).(((((((((.........))))))))).... (-26.50 = -27.88 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:49 2006