Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,482,861 – 4,482,954 |
Length | 93 |
Max. P | 0.885650 |
Location | 4,482,861 – 4,482,954 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -13.42 |
Energy contribution | -13.87 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.69 |
Structure conservation index | 0.63 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4482861 93 - 22224390 UCGUCUGGUGCAAACCAGACGCCUCUCCACUUGAGUGUCCACCGUCACCACUUCCUGCAUCAUCAGCUCCUGCGUAUUGGUCUCCAUGACCAA---- .((((((((....))))))))..........((.(((.(....).)))))...............((....))...((((((.....))))))---- ( -23.90) >DroSec_CAF1 1152 93 - 1 UCGUCUGGUGCAAAUCACACGCCUCUCCAAUUGAGUGUCCACCGUCACCACCUCCUGCAUCAUCAGCUCCUGCGUAUUGGUCUCCGUGACCAA---- .....(((((((......((((.((.......)))))).....((....))....)))))))...((....))...((((((.....))))))---- ( -18.00) >DroSim_CAF1 184 93 - 1 UCGUCUGGUGCAAACCAGACGCCUCUCCACUUGAGUGUCCACCGUCACCACCUCCUGCAUCAUCAGCUCCUGCGUAUUGGUCUCCGUGACCAA---- ..(((((((....)))))))(((((.......))).)).....(((((.(((...((((...........))))....)))....)))))...---- ( -24.00) >DroEre_CAF1 7450 93 - 1 UCUUCUGGUGCAUACCAGAAGCCUCUCCACUUUAGUGUCCUUCGCCUUCACCUCUUGCAUUACCAGCUCCUGGGUAUCGGUCUCCAUGACCAA---- .((((((((....))))))))......(((....)))............((((...((.......))....))))...((((.....))))..---- ( -22.20) >DroYak_CAF1 5779 84 - 1 UCUUCUGGUACAAACCAGACGCCUCUCCACUUGAAUGUCC---------ACCUGUGUGUUCAUCACCACCUGGGUCUCCGUCUCCAUGACCAG---- ....(((((.((....(((((....((((..((.(((..(---------((....)))..)))...))..))))....)))))...)))))))---- ( -19.30) >DroAna_CAF1 10163 97 - 1 CCUUCUGGUGCAGAUCAGCCGUCGCUCCACCGAAGCCUCUCCAUUUCGCACCUCCUGCAUGACCACCUCCUGGGAAUCGGUCUCCACCACCACCACC .....(((((.(((((....((((((.......)))...........(((.....)))..)))..((....)).....))))).)))))........ ( -20.80) >consensus UCGUCUGGUGCAAACCAGACGCCUCUCCACUUGAGUGUCCACCGUCACCACCUCCUGCAUCAUCAGCUCCUGCGUAUCGGUCUCCAUGACCAA____ .((((((((....))))))))............................................((....)).....((((.....))))...... (-13.42 = -13.87 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:46 2006