Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,482,603 – 4,482,699 |
Length | 96 |
Max. P | 0.755792 |
Location | 4,482,603 – 4,482,699 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 79.05 |
Mean single sequence MFE | -44.83 |
Consensus MFE | -24.33 |
Energy contribution | -25.38 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.19 |
Mean z-score | -2.06 |
Structure conservation index | 0.54 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755792 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4482603 96 - 22224390 GCUGAUGGCGCCCAGCGAUCGUUUGGGCGCCGGA------------------ACGGGCGAAAAGACCAGCUUCUCGGCCAGCAGCUUGCUAGGCGUUAGCUGCGUAAGGGACAU .....(((((((((((....).))))))))))..------------------((((.(((.(((.....))).))).)).((((((.((.....)).))))))))......... ( -39.80) >DroVir_CAF1 3081 99 - 1 GCUGAUGGCACCCAGCGACUGUUUAGCCGGCGGU---------------AGCACGGGCGAGAAGACCAGCUUUUCGGCAAGCAGCUUGCUGGGCGUCAGCUGCGCCAGCGACAU (((((((...((((((((((((((..(((((...---------------.)).))).(((((((.....)))))))..)))))).)))))))))))))))(((....))).... ( -45.60) >DroPse_CAF1 5234 96 - 1 GCUAAUGGCGCCCAGCGAGCGCUUUGGCCCCGGC------------------ACUGGCGAAAAGACAAGCUUCUCCGCGAGCAGCUUGCUGGGCGUUAAUUGGGCCAGGGACAU (((..((((((((((((((((((...((....))------------------...)))..........((((......)))).)))))))))))))))....)))......... ( -43.20) >DroSec_CAF1 894 96 - 1 GCUGAUGGCGCCCAGAGAUCGCUUGGGCGCCGGA------------------ACGGGCGAAAAGACCAGCUUCUCGGCCAGCAGAUUGCUAGGCGUCAGCUGCGUCAGCGACAU (((((((((((((((.......)))))))))...------------------..((.(((.(((.....))).))).)).((((..(((...)))....))))))))))..... ( -42.60) >DroYak_CAF1 5497 114 - 1 GCUGAUGGCGCCCAGCGAUCUCUUGGGCGCCGCAACGCCAACGGGAACGGGCACGGGUGAAAAGACCAGCUUCUCGGCCAGCAACUUGCUGGGCGUCAGCUGCGUCAGUGACAU (((((((((((((((.(....))))))))))((...(((..((....)))))...(((......)))((((...((.(((((.....))))).))..))))))))))))..... ( -53.50) >DroAna_CAF1 9882 96 - 1 GCUGAUGGCGCCCAGGGAUCUCUUGGGAGCCGGA------------------ACCGGCGAGAAGACCAACUUCUCGGCCAGCAGCUUGCUGGGAGUCAGCUGGGAGAGCGACAU (((..((((.((((((.....)))))).))))..------------------.(((((((((((.....))))))..(((((.....)))))......)))))...)))..... ( -44.30) >consensus GCUGAUGGCGCCCAGCGAUCGCUUGGGCGCCGGA__________________ACGGGCGAAAAGACCAGCUUCUCGGCCAGCAGCUUGCUGGGCGUCAGCUGCGUCAGCGACAU (((((((((((((((.......))))))))).......................((.(((.(((.....))).))).))(((.....)))....)))))).............. (-24.33 = -25.38 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:46 2006