Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,481,519 – 4,481,639 |
Length | 120 |
Max. P | 0.939614 |
Location | 4,481,519 – 4,481,639 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -30.03 |
Consensus MFE | -29.12 |
Energy contribution | -29.57 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.27 |
Structure conservation index | 0.97 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4481519 120 - 22224390 AUUCAAAUUGUUUUUCUAGAGCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGACAACCGGAACCGGUUGCAUCGUUAGCCAACACUGCGU .....(((((((((((.........))))))))))).......(((((((((((...((((......))))..........(.((((((....))))))).))))........))))))) ( -30.30) >DroSec_CAF1 82963 120 - 1 AUUCAAAUAGUUUUUCUAAACCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGGCAACUGGAACCGGUUGCAUCGUUAGCCAACACUGCGU .........(((((((.........)))))))...........(((((((((((...((((......))))...........(((((((....))))))).))))........))))))) ( -28.10) >DroSim_CAF1 76460 120 - 1 AUUCAAAUUGUUUUUCUAAACCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGGCAACUGGAACCGGUUGCAUCGUUAGCCAACACUGCGU .....(((((((((((.........))))))))))).......(((((((((((...((((......))))...........(((((((....))))))).))))........))))))) ( -31.70) >consensus AUUCAAAUUGUUUUUCUAAACCAGCGAGGAGCAAUUAUAAACAACGCAGUACGACACCAAAUGCCAUUUUGAAAAUCCACAGGCAACUGGAACCGGUUGCAUCGUUAGCCAACACUGCGU .....(((((((((((.........))))))))))).......(((((((((((...((((......))))...........(((((((....))))))).))))........))))))) (-29.12 = -29.57 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:13:45 2006